Parabricks

Topic	Replies	Views	Activity
Welcome to the NVIDIA Parabricks Developer Forum Welcome to our Developer Forum! This Developer Forum is open to the entire Parabricks community and is a great place to ask questions, exchange knowledge, and connect with fellow Parabricks users. If you have purchased…	1	1315	March 14, 2023
No kernel image is available for execution on the device	1	35	April 18, 2024
Issue with Workspace Size When Running pbrun fq2bamfast on Clara Parabricks 4.3.0 ai	2	339	April 18, 2024
Access tools that are in Parabricks 3.8.0	1	488	April 10, 2024
Is it possible to support STARsolo features in rna_fq2bam	1	719	April 9, 2024
Does newer version of Clara Parabricks cannt used in RTX3090? ai	1	188	April 4, 2024
Input fastq file have different size, How to slove it? ai	1	687	April 4, 2024
Oxford Nanopore Technologies A6000 DeepVariant models ai	1	635	April 4, 2024
Error with minimap2 with Parabrick v4.3 ai	1	441	April 4, 2024
Getting deepvariant to actually not realign reads? nvbugs , ai	1	452	April 3, 2024
Error in pbrun deepvariant_germline command. (with --prealign-helper-thread option)	3	679	April 2, 2024
HealthOmics ready2Run workflow [NVIDIA Parabricks FQ2BAM WGS for up to 5X] permission error	1	308	April 2, 2024
Parabricks pbrun failed with cuGraphAddKernelNode_v2 error cuda , ai	0	315	March 30, 2024
Error running parabricks on gcp ai	1	367	March 27, 2024
Documentation: algorithm used for phasing in parabricks deepvariant ai	1	417	March 25, 2024
Error in pbrun minimap2 with Parabricks 4.2.1-1 container ai	4	915	March 22, 2024
Fq2bam Update for Hi-C data processing. BWA-MEM version?	0	452	March 14, 2024
Error in pbrun deepvariant command. (with --channel-gc-content)	2	607	March 14, 2024
"Could not run collectmultiplemetrics" : Record contains library that is missing from header: ai	5	566	March 11, 2024
--two-pass-mode "Basic" pipeline crash after 1st pass finished successfully ai	1	487	March 9, 2024
Add more ploidy levels for gatk parabricks please	0	492	March 9, 2024
Clara-parabricks 4.2.0-1 container: rna_fq2bam; ERROR running STAR inside the container "error while loading shared libraries: libfilehandle.so" ai	2	782	February 29, 2024
Error/Bug In running HaplotypeCaller	0	533	February 20, 2024
BWA Recovery Mode	0	454	February 15, 2024
Rna_fq2bam should support --align-only ai	2	1060	January 30, 2024
Clara-parabricks 4.2.0-1: is rna_fq2bam not designed for fragment lengths > 100 ( --sjdbOverhang > 100)? ai	0	463	January 30, 2024
Fq2bam rel3-nanopore-wgs-288418386-FAB39088.fastq.gz	4	1102	January 29, 2024
Haplotypecaller --sample-sex	2	477	January 29, 2024
Clara-parabricks 4.0.0-1 and 4.2.0-1: STAR equivalent parameters? no speed up observed in rna_fq2bam compared to equivalent STAR ai	4	833	January 17, 2024
Pacbio workflow	3	1014	January 11, 2024

Welcome to the NVIDIA Parabricks Developer Forum

Welcome to our Developer Forum! This Developer Forum is open to the entire Parabricks community and is a great place to ask questions, exchange knowledge, and connect with fellow Parabricks users. If you have purchased…

1

1315

March 14, 2023

No kernel image is available for execution on the device

1

35

April 18, 2024

Issue with Workspace Size When Running pbrun fq2bamfast on Clara Parabricks 4.3.0

ai

2

339

April 18, 2024

Access tools that are in Parabricks 3.8.0

1

488

April 10, 2024

Is it possible to support STARsolo features in rna_fq2bam

1

719

April 9, 2024

Does newer version of Clara Parabricks cannt used in RTX3090?

ai

1

188

April 4, 2024

Input fastq file have different size, How to slove it?

ai

1

687

April 4, 2024

Oxford Nanopore Technologies A6000 DeepVariant models

ai

1

635

April 4, 2024

Error with minimap2 with Parabrick v4.3

ai

1

441

April 4, 2024

Getting deepvariant to actually not realign reads?

nvbugs , ai

1

452

April 3, 2024

Error in pbrun deepvariant_germline command. (with --prealign-helper-thread option)

3

679

April 2, 2024

HealthOmics ready2Run workflow [NVIDIA Parabricks FQ2BAM WGS for up to 5X] permission error

1

308

April 2, 2024

Parabricks pbrun failed with cuGraphAddKernelNode_v2 error

cuda , ai

0

315

March 30, 2024

Error running parabricks on gcp

ai

1

367

March 27, 2024

Documentation: algorithm used for phasing in parabricks deepvariant

ai

1

417

March 25, 2024

Error in pbrun minimap2 with Parabricks 4.2.1-1 container

ai

4

915

March 22, 2024

Fq2bam Update for Hi-C data processing. BWA-MEM version?

0

452

March 14, 2024

Error in pbrun deepvariant command. (with --channel-gc-content)

2

607

March 14, 2024

"Could not run collectmultiplemetrics" : Record contains library that is missing from header:

ai

5

566

March 11, 2024

--two-pass-mode "Basic" pipeline crash after 1st pass finished successfully

ai

1

487

March 9, 2024

Add more ploidy levels for gatk parabricks please

0

492

March 9, 2024

Clara-parabricks 4.2.0-1 container: rna_fq2bam; ERROR running STAR inside the container "error while loading shared libraries: libfilehandle.so"

ai

2

782

February 29, 2024

Error/Bug In running HaplotypeCaller

0

533

February 20, 2024

BWA Recovery Mode

0

454

February 15, 2024

Rna_fq2bam should support --align-only

ai

2

1060

January 30, 2024

Clara-parabricks 4.2.0-1: is rna_fq2bam not designed for fragment lengths > 100 ( --sjdbOverhang > 100)?

ai

0

463

January 30, 2024

Fq2bam rel3-nanopore-wgs-288418386-FAB39088.fastq.gz

4

1102

January 29, 2024

Haplotypecaller --sample-sex

2

477

January 29, 2024

Clara-parabricks 4.0.0-1 and 4.2.0-1: STAR equivalent parameters? no speed up observed in rna_fq2bam compared to equivalent STAR

ai

4

833

January 17, 2024

Pacbio workflow

3

1014

January 11, 2024

Healthcare Parabricks