I’ve been trying to flash a custom rootfs using the jetpack scripts. It seems that after replacing the sample rootfs, with a custom one, and running the apply_binaries.sh script, files with permissions as
-rwsr-xr-x
are changed to
-rwxr-xr-x
. This creates an immediate problem with being able to execute sudo commands, however, other programs e.g ping, are also affected (these commands only work when run with sudo now)