Hi,
While installing CDO 1.8.2 (Overview - CDO - Project Management Service) with PGI 18.10 CE (within spack - spack.io), I hit the following error:
# /opt/spack/var/spack/stage/cdo-1.8.2-nhbsh7whzlithmlm6lcjnmejvcmjlrxb/cdo-1.8.2/configure --prefix=/opt/software/linux-centos7-x86_64/pgi/18.10/cdo/1.8.2-nhbsh7whzlithmlm6lcjnmejvcmjlrxb --with-netcdf=/opt/software/linux-centos7-x86_64/pgi/18.10/netcdf/4.6.2-mg5rfhujh2bid7xu4na2p5vvwpdjwsci --with-grib_api=/opt/software/linux-centos7-x86_64/pgi/18.10/grib-api/1.24.0-oxzpnddzxqyd6fan5cpdjzdqonnypslt --enable-cgribex --with-szlib=/opt/software/linux-centos7-x86_64/pgi/18.10/libszip/2.1.1-bmj3b7dylez6mp7zdhpcu2fgpco2ub5t --with-hdf5=/opt/software/linux-centos7-x86_64/pgi/18.10/hdf5/1.10.4-ukcggvdjodzyljqrey2ww4oyjobbgsyd --with-udunits2=/opt/software/linux-centos7-x86_64/pgi/18.10/udunits2/2.2.24-j57yy2f62casgoyofchtk723r7wgu3qk --with-libxml2=/opt/software/linux-centos7-x86_64/gcc/8.2.0/libxml2/2.9.8-hn3qdklwaynnnqkfk2wdy3dadleghx6l --with-proj=/opt/software/linux-centos7-x86_64/pgi/18.10/proj/5.0.1-rvq2yqdtwybvcbncmiv3bughkqrvbtzp --without-curl --without-magics --with-fftw3 --enable-openmp
...
libtool: link: /opt/spack/lib/spack/env/pgi/pgcc -g -mp -o cdo cdo-cdo.o cdo-Adisit.o cdo-Afterburner.o cdo-Arith.o cdo-Arithc.o cdo-Arithdays.o cdo-Arithlat.o cdo-CDItest.o cdo-CDIread.o cdo-CDIwrite.o cdo-Cat.o cdo-Change.o cdo-Change_e5slm.o cdo-Cloudlayer.o cdo-CMOR.o cdo-CMOR_lite.o cdo-CMOR_table.o cdo-Collgrid.o cdo-Command.o cdo-Comp.o cdo-Compc.o cdo-Complextorect.o cdo-Cond.o cdo-Cond2.o cdo-Condc.o cdo-Consecstat.o cdo-Copy.o cdo-Deltat.o cdo-Deltime.o cdo-Derivepar.o cdo-Detrend.o cdo-Diff.o cdo-Distgrid.o cdo-Duplicate.o cdo-EOFs.o cdo-Eof3d.o cdo-EcaIndices.o cdo-Echam5ini.o cdo-Enlarge.o cdo-Enlargegrid.o cdo-Ensstat.o cdo-Ensstat3.o cdo-Ensval.o cdo-Eofcoeff.o cdo-Eofcoeff3d.o cdo-Exprf.o cdo-FC.o cdo-Filedes.o cdo-Fillmiss.o cdo-Filter.o cdo-Fldrms.o cdo-Fldstat.o cdo-Fldstat2.o cdo-Fourier.o cdo-Gengrid.o cdo-Gradsdes.o cdo-Gridboxstat.o cdo-Gridcell.o cdo-Gridsearch.o cdo-Harmonic.o cdo-Hi.o cdo-Histogram.o cdo-Importamsr.o cdo-Importbinary.o cdo-Importcmsaf.o cdo-Importobs.o cdo-Info.o cdo-Input.o cdo-Intgrid.o cdo-Intgridtraj.o cdo-Intlevel.o cdo-Intlevel3d.o cdo-Intntime.o cdo-Inttime.o cdo-Intyear.o cdo-Invert.o cdo-Invertlev.o cdo-Isosurface.o cdo-Log.o cdo-MapReduce.o cdo-Maskbox.o cdo-Mastrfu.o cdo-Math.o cdo-Merge.o cdo-Mergegrid.o cdo-Mergetime.o cdo-Merstat.o cdo-Monarith.o cdo-Mrotuv.o cdo-Mrotuvb.o cdo-Ninfo.o cdo-Nmldump.o cdo-Output.o cdo-Outputgmt.o cdo-Pack.o cdo-Pardup.o cdo-Pinfo.o cdo-Pressure.o cdo-Regres.o cdo-Remap.o cdo-Remapeta.o cdo-Replace.o cdo-Replacevalues.o cdo-Rhopot.o cdo-Rotuv.o cdo-Runpctl.o cdo-Runstat.o cdo-Samplegrid.o cdo-Samplegridicon.o cdo-Seascount.o cdo-Seaspctl.o cdo-Seasstat.o cdo-Selbox.o cdo-Selgridcell.o cdo-Select.o cdo-Selmulti.o cdo-Seloperator.o cdo-Selrec.o cdo-Seltime.o cdo-Selvar.o cdo-Set.o cdo-Setattribute.o cdo-Setbox.o cdo-Setgatt.o cdo-Setgrid.o cdo-Sethalo.o cdo-Setmiss.o cdo-Setpartab.o cdo-Setrcaname.o cdo-Settime.o cdo-Setzaxis.o cdo-Shiftxy.o cdo-Showinfo.o cdo-Sinfo.o cdo-Smooth.o cdo-Sort.o cdo-Sorttimestamp.o cdo-Specinfo.o cdo-Spectral.o cdo-Spectrum.o cdo-Split.o cdo-Splitrec.o cdo-Splitsel.o cdo-Splittime.o cdo-Splityear.o cdo-Subtrend.o cdo-Tee.o cdo-Templates.o cdo-Test.o cdo-Tests.o cdo-Timcount.o cdo-Timcumsum.o cdo-Timpctl.o cdo-Timselpctl.o cdo-Timselstat.o cdo-Timsort.o cdo-Timstat.o cdo-Timstat2.o cdo-Timstat3.o cdo-Tinfo.o cdo-Tocomplex.o cdo-Transpose.o cdo-Trend.o cdo-Trms.o cdo-Tstepcount.o cdo-Vargen.o cdo-Varrms.o cdo-Vertintml.o cdo-Vertintap.o cdo-Vertstat.o cdo-Vertcum.o cdo-Vertwind.o cdo-Verifygrid.o cdo-Wct.o cdo-Wind.o cdo-WindTrans.o cdo-Writegrid.o cdo-Writerandom.o cdo-XTimstat.o cdo-YAR.o cdo-Yearmonstat.o cdo-Ydayarith.o cdo-Ydaypctl.o cdo-Ydaystat.o cdo-Ydrunpctl.o cdo-Ydrunstat.o cdo-Yhourarith.o cdo-Yhourstat.o cdo-Ymonarith.o cdo-Ymonpctl.o cdo-Ymonstat.o cdo-Yseaspctl.o cdo-Yseasstat.o cdo-Zonstat.o cdo-Magplot.o cdo-Magvector.o cdo-Maggraph.o cdo-template_parser.o cdo-results_template_parser.o cdo-magics_template_parser.o cdo-StringUtilities.o cdo-CdoMagicsMapper.o -L/opt/software/linux-centos7-x86_64/gcc/8.2.0/libxml2/2.9.8-hn3qdklwaynnnqkfk2wdy3dadleghx6l/lib -L/opt/software/linux-centos7-x86_64/pgi/18.10/proj/5.0.1-rvq2yqdtwybvcbncmiv3bughkqrvbtzp/lib -L/opt/software/linux-centos7-x86_64/pgi/18.10/grib-api/1.24.0-oxzpnddzxqyd6fan5cpdjzdqonnypslt/lib -L/opt/software/linux-centos7-x86_64/pgi/18.10/netcdf/4.6.2-mg5rfhujh2bid7xu4na2p5vvwpdjwsci/lib -L/opt/software/linux-centos7-x86_64/pgi/18.10/hdf5/1.10.4-ukcggvdjodzyljqrey2ww4oyjobbgsyd/lib -L/opt/software/linux-centos7-x86_64/pgi/18.10/libszip/2.1.1-bmj3b7dylez6mp7zdhpcu2fgpco2ub5t/lib -L/opt/software/linux-centos7-x86_64/pgi/18.10/udunits2/2.2.24-j57yy2f62casgoyofchtk723r7wgu3qk/lib ./.libs/libcdo.a -L//lib -L/opt/software/linux-centos7-x86_64/gcc/8.2.0/zlib/1.2.11-zgpsjkhbmc66rbiqfar75ydfb5o7rsaw/lib ../libcdi/src/.libs/libcdi.a -luuid /opt/software/linux-centos7-x86_64/gcc/8.2.0/libxml2/2.9.8-hn3qdklwaynnnqkfk2wdy3dadleghx6l/lib/libxml2.so -llzma -liconv /opt/software/linux-centos7-x86_64/pgi/18.10/proj/5.0.1-rvq2yqdtwybvcbncmiv3bughkqrvbtzp/lib/libproj.so -lfftw3 -lgrib_api /opt/software/linux-centos7-x86_64/pgi/18.10/udunits2/2.2.24-j57yy2f62casgoyofchtk723r7wgu3qk/lib/libudunits2.so -lexpat /opt/software/linux-centos7-x86_64/pgi/18.10/netcdf/4.6.2-mg5rfhujh2bid7xu4na2p5vvwpdjwsci/lib/libnetcdf.so /opt/software/linux-centos7-x86_64/pgi/18.10/hdf5/1.10.4-ukcggvdjodzyljqrey2ww4oyjobbgsyd/lib/libhdf5_hl.so /opt/software/linux-centos7-x86_64/pgi/18.10/hdf5/1.10.4-ukcggvdjodzyljqrey2ww4oyjobbgsyd/lib/libhdf5.so -lpthread -lz -ldl /opt/software/linux-centos7-x86_64/pgi/18.10/libszip/2.1.1-bmj3b7dylez6mp7zdhpcu2fgpco2ub5t/lib/libsz.so -lm -mp -Wl,-rpath -Wl,/opt/software/linux-centos7-x86_64/gcc/8.2.0/libxml2/2.9.8-hn3qdklwaynnnqkfk2wdy3dadleghx6l/lib -Wl,-rpath -Wl,/opt/software/linux-centos7-x86_64/pgi/18.10/proj/5.0.1-rvq2yqdtwybvcbncmiv3bughkqrvbtzp/lib -Wl,-rpath -Wl,/opt/software/linux-centos7-x86_64/pgi/18.10/udunits2/2.2.24-j57yy2f62casgoyofchtk723r7wgu3qk/lib -Wl,-rpath -Wl,/opt/software/linux-centos7-x86_64/pgi/18.10/netcdf/4.6.2-mg5rfhujh2bid7xu4na2p5vvwpdjwsci/lib -Wl,-rpath -Wl,/opt/software/linux-centos7-x86_64/pgi/18.10/hdf5/1.10.4-ukcggvdjodzyljqrey2ww4oyjobbgsyd/lib -Wl,-rpath -Wl,/opt/software/linux-centos7-x86_64/pgi/18.10/libszip/2.1.1-bmj3b7dylez6mp7zdhpcu2fgpco2ub5t/lib -Wl,-rpath -Wl,/opt/software/linux-centos7-x86_64/gcc/8.2.0/libxml2/2.9.8-hn3qdklwaynnnqkfk2wdy3dadleghx6l/lib -Wl,-rpath -Wl,/opt/software/linux-centos7-x86_64/pgi/18.10/proj/5.0.1-rvq2yqdtwybvcbncmiv3bughkqrvbtzp/lib -Wl,-rpath -Wl,/opt/software/linux-centos7-x86_64/pgi/18.10/udunits2/2.2.24-j57yy2f62casgoyofchtk723r7wgu3qk/lib -Wl,-rpath -Wl,/opt/software/linux-centos7-x86_64/pgi/18.10/netcdf/4.6.2-mg5rfhujh2bid7xu4na2p5vvwpdjwsci/lib -Wl,-rpath -Wl,/opt/software/linux-centos7-x86_64/pgi/18.10/hdf5/1.10.4-ukcggvdjodzyljqrey2ww4oyjobbgsyd/lib -Wl,-rpath -Wl,/opt/software/linux-centos7-x86_64/pgi/18.10/libszip/2.1.1-bmj3b7dylez6mp7zdhpcu2fgpco2ub5t/lib
./.libs/libcdo.a(libcdo_la-grid_search.o):(.debug_info+0x19bf): undefined reference to `.LBa9509'
./.libs/libcdo.a(libcdo_la-grid_search.o):(.debug_info+0x19c7): undefined reference to `.LBa9510'
./.libs/libcdo.a(libcdo_la-grid_search.o):(.debug_info+0x1b33): undefined reference to `.LBa10022'
./.libs/libcdo.a(libcdo_la-grid_search.o):(.debug_info+0x1b3b): undefined reference to `.LBa10023'
./.libs/libcdo.a(libcdo_la-grid_search.o):(.debug_info+0x1b47): undefined reference to `.LBa10074'
./.libs/libcdo.a(libcdo_la-grid_search.o):(.debug_info+0x1b4f): undefined reference to `.LBa10075'
./.libs/libcdo.a(libcdo_la-grid_search.o):(.debug_info+0x1b5b): undefined reference to `.LBa10111'
./.libs/libcdo.a(libcdo_la-grid_search.o):(.debug_info+0x1b63): undefined reference to `.LBa10112'
make[2]: *** [cdo] Error 2
make[2]: Leaving directory `/dev/shm/root/spack-stage/spack-stage-xv7fith9/cdo-1.8.2/src'
make[1]: *** [all] Error 2
make[1]: Leaving directory `/dev/shm/root/spack-stage/spack-stage-xv7fith9/cdo-1.8.2/src'
make: *** [all-recursive] Error 1
CDO with the same dependencies with GCC 8.2.0 successfully completed.
The same CDO version successfully built with PGI 15.
Since I’ve noticed many of these bugs in this last PGI release (for example fftw is unable to build with avx2 flags from PGI 16 onwards), I’d like to download an archived version of PGI, but the community edition page only allows downloading the latest version.