My build of OpenMPI 1.4.1 fails to link in tools/otfaux. The GNU build works without any errors for otfaux on the same system.
System: Red Hat Enterprise Linux Client release 5.5 (Tikanga)
PGI Release:
pgcc -V
pgcc 10.8-0 64-bit target on x86-64 Linux -tp shanghai-64
Here are the error messages:
Making all in tools
make[8]: Entering directory /sscc/opt/Apps/OpenMPI/Configs/PGI/ompi/contrib/vt/vt/extlib/otf/tools' Making all in otfaux make[9]: Entering directory
/sscc/opt/Apps/OpenMPI/Configs/PGI/ompi/contrib/vt/vt/extlib/otf/tools/otfaux’
g++ -DHAVE_CONFIG_H -I. -I/root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf/tools/otfaux -I…/… -I…/…/otflib -I/root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf/otflib -I/root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf -D_REENTRANT -MT otfaux.o -MD -MP -MF .deps/otfaux.Tpo -c -o otfaux.o /root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf/tools/otfaux/otfaux.cpp
mv -f .deps/otfaux.Tpo .deps/otfaux.Po
g++ -DHAVE_CONFIG_H -I. -I/root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf/tools/otfaux -I…/… -I…/…/otflib -I/root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf/otflib -I/root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf -D_REENTRANT -MT Control.o -MD -MP -MF .deps/Control.Tpo -c -o Control.o /root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf/tools/otfaux/Control.cpp
mv -f .deps/Control.Tpo .deps/Control.Po
g++ -DHAVE_CONFIG_H -I. -I/root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf/tools/otfaux -I…/… -I…/…/otflib -I/root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf/otflib -I/root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf -D_REENTRANT -MT Handler.o -MD -MP -MF .deps/Handler.Tpo -c -o Handler.o /root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf/tools/otfaux/Handler.cpp
mv -f .deps/Handler.Tpo .deps/Handler.Po
g++ -DHAVE_CONFIG_H -I. -I/root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf/tools/otfaux -I…/… -I…/…/otflib -I/root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf/otflib -I/root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf -D_REENTRANT -MT State.o -MD -MP -MF .deps/State.Tpo -c -o State.o /root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf/tools/otfaux/State.cpp
mv -f .deps/State.Tpo .deps/State.Po
/bin/sh …/…/libtool --tag=CXX --mode=link g++ -o otfaux otfaux.o Control.o Handler.o State.o …/…/otflib/libotf.la -lz -lnsl -lutil -lpthread
libtool: link: g++ -o otfaux otfaux.o Control.o Handler.o State.o …/…/otflib/.libs/libotf.a -lz -lnsl -lutil -lpthread
…/…/otflib/.libs/libotf.a(OTF_Reader.o): In function OTF_Reader_readEventsUnsorted': /root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf/otflib/OTF_Reader.c:2031: undefined reference to
__mth_i_dfloatuk’
/root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf/otflib/OTF_Reader.c:2031: undefined reference to __mth_i_dfloatuk' /root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf/otflib/OTF_Reader.c:2031: undefined reference to
__mth_i_dfloatuk’
/root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf/otflib/OTF_Reader.c:2031: undefined reference to __mth_i_dfixuk' ../../otflib/.libs/libotf.a(OTF_Reader.o): In function
OTF_Reader_readSnapshotsUnsorted’:
/root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf/otflib/OTF_Reader.c:2680: undefined reference to __mth_i_dfloatuk' /root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf/otflib/OTF_Reader.c:2680: undefined reference to
__mth_i_dfloatuk’
/root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf/otflib/OTF_Reader.c:2680: undefined reference to __mth_i_dfloatuk' /root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf/otflib/OTF_Reader.c:2680: undefined reference to
__mth_i_dfixuk’
…/…/otflib/.libs/libotf.a(OTF_Reader.o): In function OTF_Reader_readStatisticsUnsorted': /root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf/otflib/OTF_Reader.c:3325: undefined reference to
__mth_i_dfloatuk’
/root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf/otflib/OTF_Reader.c:3325: undefined reference to __mth_i_dfloatuk' /root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf/otflib/OTF_Reader.c:3325: undefined reference to
__mth_i_dfloatuk’
/root/OpenMPI/openmpi-1.4.2/ompi/contrib/vt/vt/extlib/otf/otflib/OTF_Reader.c:3325: undefined reference to `__mth_i_dfixuk’
collect2: ld returned 1 exit status
make[9]: *** [otfaux] Error 1
My configuration:
NUVER=1.4.2
env CC=pgcc FC=pgfortran F77=pgfortran CXX=pgcpp CFLAGS=-fast FFLAGS=-fast CXXFLAGS=-fast
/root/OpenMPI/openmpi-${NUVER}/configure
–prefix=/opt/openmpi/PGI
–with-tm=/usr/pbs
–enable-static
2>&1 | tee NUInstall.configure
What can I do to get past this problem?
Thanks!
Bruce