Hi, may I know if the bwa-mem alignment software can be made to be alternate contigs aware?
The topic is covered in GATK4 below
Regards
Solyris
Related topics
| Topic | Replies | Views | Activity | |
|---|---|---|---|---|
| Bwa options addition | 5 | 58 | October 23, 2024 | |
| Expanding Accelerated Genomic Analysis to RNA, Gene Panels, and Annotation | 0 | 324 | February 22, 2022 | |
| Long read analysis tools | 3 | 761 | June 23, 2021 | |
| Fq2bam Update for Hi-C data processing. BWA-MEM version? | 1 | 858 | February 28, 2025 | |
| Struggling to produce identical results between Parabricks fq2bam (with apptainer) and bwa and gatk | 2 | 1001 | February 12, 2023 | |
| Scale Cancer Genome Sequencing Analysis and Variant Annotation Using NVIDIA Clara Parabricks 3.8 | 0 | 343 | June 6, 2022 | |
| [v3.8][A100][germline] got stuck in the BWA program | 0 | 988 | May 27, 2022 | |
| BWA Recovery Mode | 1 | 633 | November 18, 2024 | |
| Fq2bam rel3-nanopore-wgs-288418386-FAB39088.fastq.gz | 4 | 1216 | January 29, 2024 | |
| Can I run vanilla STAR accelerated through parabricks 3.8.0.1? | 0 | 660 | April 26, 2023 |