I can’t use parabrick V4.4.0 .I meet the wrong in these software. Thank you for giving me help.
docker run --rm --gpus all --volume /data3/fanwy/huahui/:/1 nvcr.io/nvidia/clara/clara-parabricks:4.4.0-1 pbrun fq2bam --ref /1/ref/xbl_newid.fasta --in-fq /1/call/fastq/26-9_1.fq.gz /1/call/fastq/26-9_2.fq.gz --out-bam /1/1.bam
[Parabricks Options Mesg]: Checking argument compatibility
[Parabricks Options Mesg]: Set --bwa-options=“-K #” to produce compatible pair-ended results with previous versions of
fq2bam or BWA MEM.
[Parabricks Options Mesg]: Automatically generating ID prefix
[Parabricks Options Mesg]: Read group created for /1/call/fastq/26-9_1.fq.gz and /1/call/fastq/26-9_2.fq.gz
[Parabricks Options Mesg]:
@RG\tID:DP8480011191TLL1C001R005002054.1\tLB:lib1\tPL:bar\tSM:sample\tPU:DP8480011191TLL1C001R005002054.1
[PB Info 2024-Nov-21 11:03:00] ------------------------------------------------------------------------------
[PB Info 2024-Nov-21 11:03:00] || Parabricks accelerated Genomics Pipeline ||
[PB Info 2024-Nov-21 11:03:00] || Version 4.4.0-1 ||
[PB Info 2024-Nov-21 11:03:00] || GPU-PBBWA mem, Sorting Phase-I ||
[PB Info 2024-Nov-21 11:03:00] ------------------------------------------------------------------------------
[PB Info 2024-Nov-21 11:03:00] Mode = pair-ended-gpu
[PB Info 2024-Nov-21 11:03:00] Running with 4 GPU(s), using 4 stream(s) per device with 16 worker threads per GPU
terminate called after throwing an instance of ‘std::system_error’
what(): Operation not permitted
[PB Error 2024-Nov-21 11:03:00][-unknown-:0] Received signal: 6
For technical support visit NVIDIA Clara - NVIDIA Docs, exiting.
For technical support visit NVIDIA Clara - NVIDIA Docs
Exiting…
Please visit NVIDIA Clara - NVIDIA Docs for detailed documentation