Does fastq2bam tool have the ability to remove marked duplicates

Healthcare Clara Parabricks
#1

Title pretty much says it. GATK MarkDuplicates has an option to remove sequencing duplicates, and I was wondering if Parabricks fastq2bam had a similar option. Didn’t see it anywhere in the tool documentation.

#2

Hey @vedant.kt

Parabricks fq2bam can only mark duplicates, it can’t delete them.