Error in 'germline' pipeline: argument --ref: invalid IsFileReadable

Healthcare & Life Sciences Parabricks
1

When using pbrun germline I always end up with the follwing error:
run_pipeline.py: error: argument --ref: invalid IsFileReadable value: '/data/Parabricks/parabricks_sample/Ref/Homo_sapiens_assembly38.fasta'

The file is perfectly accessible. I can’t explain where the error comes from.
Kind regards,
Thomas

2

Hey @cts1,

Can you paste the exact command you’re running that yields this error?

3

Is this resolved? Otherwise @cts1 try unzipping the gz-fies. Worked for me.