How does Parabricks Pipelines perform data cleaning?

Hello, we are trying to use pbrun to receive the off-machine data-NextSeq550AR, and generally clean up the data, such as using fastQC and Trimmomatic software, when using BWA-men for mapping, do you need to do this when using pbrun?

Hi,

None of fastQC nor Trimmomatic is included.
You will still need to clean your data using this software before using Parabricks.

Regards,
Myrieme