Edit: Problem was caused by I3, use Unity for Jetpack.
A fresh installation of Jetpack 3.2 will only let you flash the board once. If you want to flash again you have to reinstall the driver and rootfs.
If you try to flash a second time it fails the sudo daemon
Then it fails to find the fifo
I’ve attached the debug log.
After uninstalling and reinstalling rootfs/driver everything seems to work again.
jetpack_debug.log (28.7 KB)