Multiple chromosome region for deepvariant_training


I followed the tutorial for retraining deepvariant (link). The tutorial only generate training samples on ONE chromosome. I want to ask if it’s possible to put multiple chromosome region in one training command. I tried with “chr1 chr2” and the program cannot recognize the region.


Hello @huyen.nguyen,

I’m actually not sure, but i’m looking into it. I would try using a comma “,” to separate each region in quotes like “chr1, chr2” or maybe “[chr1, chr2]”.