Hi, I want to fine tune pre-trained model for liver segmentation.
It should be trained on Task03_Liver dataset from Medical Decathlon.
I download 3Dircadb dataset which contains dicom images.
I am trying to convert them to nifti format. The problem is that it cant do conversion.
Paths are correct. If I rename it from image_0 to image_0.dcm it can read it. But it will create only one files caled .nii for all images in folder.
nvmidl-dataconvert -d /workspace/data/3Dircadb_liver/labelsTr -r 1 -s .dcm -e .nii.gz -o /workspace/data/Task03_Liver_nii/labelsTr
Do you have any idea what could be wrong?
I am obtaining this announcement (I have more then 100 input images): Converting dicom series 1 of 1 in .
Thanks for your help.