parabricks:4.0.0-1 , with nvidia/cuda:12.2.0-devel-ubuntu22.04;
system: Ubuntu20.04/ 512G memory/ 1 p100 16G card/ 38T disk space/
It works perfectly on one of my workstation, but on another, encountered the errors while in ‘haplotypecaller’ step:
input command:
for i in cat list; do docker run --gpus “device=0” --rm --volume $(pwd):/workdir --volume $(pwd):/outputdir nvcr.io/nvidia/clara/clara-parabricks:4.0.0-1 pbrun haplotypecaller --ref /workdir/ref/hg38.fa --gvcf --in-bam /workdir/$i.bam --out-variants /outputdir/$i.g.vcf; done
the output error was as follows:
Illegal instruction (core dumped)
/usr/local/parabricks/binaries//bin/htvc /workdir/ref/hg38.fa /workdir/asp1.bam 1 -o /outputdir/asp1.g.vcf -nt 5 -g
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Any suggestions? Thanks, everybody!