I would like to use Clara to segment scans and view them in the OHIF Viewer (https://github.com/OHIF/Viewers/, http://ohif.org/). We plan to support DICOM Segmentation Storage files in OHIF directly, and I was wondering if this is a planned output of Clara’s DICOM adapter.
I tested the organ segmentation pipeline and it looks like it is producing CT Image Storage DICOM objects with the labelled regions as different label values in the grayscale image. I couldn’t find any configuration for the output in the docs (https://docs.nvidia.com/clara/deploy/ngc/DicomAdapter.html).
I suppose I could write a pipeline operator to convert from the CT Image Storage to a Segmentation Storage file using dcmqi (https://github.com/qiicr/dcmqi), but it feels like this should be built into the adapter.