hi,
can anyone share the smith waterman algorithm implementation in CUDA?
I am learning CUDA. Facing difficulty in implementation.
please help.
Thanks in advance
hi,
can anyone share the smith waterman algorithm implementation in CUDA?
I am learning CUDA. Facing difficulty in implementation.
please help.
Thanks in advance
There may be several implementations out there that you could study. Here is one:
[url]CUDASW++ - GPU accelerated Smith Waterman algorithm
The cited papers there should be a good start, such as this one:
[url]http://bmcresnotes.biomedcentral.com/articles/10.1186/1756-0500-2-73[/url]
thanks
i want basic Smithwaterman implementation code