Smithwaterman CUDA code

hi,

can anyone share the smith waterman algorithm implementation in CUDA?

I am learning CUDA. Facing difficulty in implementation.

please help.

Thanks in advance

There may be several implementations out there that you could study. Here is one:

http://cudasw.sourceforge.net/homepage.htm#latest

The cited papers there should be a good start, such as this one:

http://bmcresnotes.biomedcentral.com/articles/10.1186/1756-0500-2-73

thanks

i want basic Smithwaterman implementation code