Unable to Compile - GPU Nvidia Tesla v100 32GB

Graphics / Linux Linux
1

Hi,

I’m trying to compile Caffe, when I ran the cmake command … in Caffe’s build directory, it even introduced me that it could not detect the GPU.

After that, I ran the make -j “$ (nproc)” command and got the following error:

nvcc fatal: Unsupported gpu architecture ‘compute_20’

I’ve encountered other errors too, when I squeeze the nvidia-smi command it returns me the following:

Failed to initialize NVML: Driver / library version mismatch

I have 8 Nvidia Tesla V100 32Gb cards, I also looked at the nvidia-persistenced and what turned me on was the following:

Mar 18 13:48:00 ubuntu nvidia-persistenced [5838]: Failed to query NVIDIA devices. Please ensure that the NVIDIA device files (/ dev / nvidia *) exist, and that user has read and write permissions for those files. ( I have already checked the permissions of the files and apparently it is OK. )
Mar 18 13:48:00 ubuntu nvidia-persistenced [5838]: PID file unlocked.
Mar 18 13:48:00 ubuntu nvidia-persistenced [5837]: nvidia-persistenced failed to initialize. Check syslog for more details.
Mar 18 13:48:00 ubuntu kernel: NVRM: API mismatch: the client has the version 418.43, but
NVRM: this kernel module has version 418.39. Please
NVRM: make sure that this kernel module and all NVIDIA driver
NVRM: components have the same version.

My operating system is:

Ubuntu 16.04.06
Cuda 10.1

Could someone give me a hand?

2

cc 2.0 isn’t supported anymore since cuda 9. Change your makefile to use at least cc 3.0 or the cc of your gpus:
compute_20->compute_30

You installed driver 418.39 over 418.43 or the other way round, probably using the .deb package for one and the .run installer for the other. Leads to a broken system. Ubuntu install instructions:

  • Don’t use the .run installers, use --uninstall to uninstall them
  • purge anthing nvidia/cuda
  • add the ubuntu graphics staging ppa [url]https://launchpad.net/~mamarley/+archive/ubuntu/staging[/url]
  • install the driver from that (sudo apt install nvidia-418)
  • download the cuda .deb
  • add the repo to your system (first three steps from install instructions on download page)
  • don’t install cuda
  • instead, run sudo apt install cuda-toolkit-10-1

Normally, one would not use the staging ppa but the normal ppa https://launchpad.net/~graphics-drivers/+archive/ubuntu/ppa
but this currently does not have the needed 418 driver for Ubuntu 16.04 needed for cuda 10.1.

3

Can you help me to change my makefile?

4

Open “Makefile” in a text editor, search&replace, search: compute_20, replace with: compute_30, replace all, save.
Not much to it.

5

For Caffe, it’s even easier. It has a Makefile.config where you set the compute options with an explanation what to comment out:
https://github.com/BVLC/caffe/blob/master/Makefile.config.example

6

OK, I will do this and when I finish giving you feedback, thank you.

7

In my Makefile there was no such option, only in the Makefile that is as an example and even changing in it still appears …

Could you tell me where this Makefile is?

8

Read my follow up post, you have to comment out the lines in “Makefile.config”.

9

As you asked, I made these settings, circled the commands again and the return was:

root@ubuntu:/softwares_nvidia/caffe/build# make -j"$(nproc)"
[ 1%] Running C++/Python protocol buffer compiler on /softwares_nvidia/caffe/src/caffe/proto/caffe.proto
Scanning dependencies of target proto
[ 1%] Building CXX object src/caffe/CMakeFiles/proto.dir///include/caffe/proto/caffe.pb.cc.o
[ 1%] Linking CXX static library …/…/lib/libproto.a
[ 1%] Built target proto
[ 1%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/util/cuda_compile_1_generated_math_functions.cu.o
[ 1%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/cuda_compile_1_generated_data_transformer.cu.o
[ 1%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_absval_layer.cu.o
[ 2%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_base_data_layer.cu.o
[ 2%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_batch_norm_layer.cu.o
[ 2%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_batch_reindex_layer.cu.o
[ 4%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_bias_layer.cu.o
[ 4%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_bnll_layer.cu.o
[ 4%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_concat_layer.cu.o
[ 5%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_contrastive_loss_layer.cu.o
[ 5%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_conv_layer.cu.o
[ 6%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_crop_layer.cu.o
[ 6%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_cudnn_batch_norm_layer.cu.o
[ 6%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_cudnn_conv_layer.cu.o
[ 8%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_cudnn_lcn_layer.cu.o
[ 8%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_cudnn_lrn_layer.cu.o
[ 8%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_cudnn_pooling_layer.cu.o
[ 9%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_cudnn_relu_layer.cu.o
[ 9%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_cudnn_sigmoid_layer.cu.o
[ 9%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_cudnn_softmax_layer.cu.o
[ 10%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_cudnn_tanh_layer.cu.o
[ 10%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_deconv_layer.cu.o
[ 12%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_detectnet_transform_layer.cu.o
[ 12%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_dropout_layer.cu.o
[ 12%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_eltwise_layer.cu.o
[ 12%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_embed_layer.cu.o
[ 13%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_elu_layer.cu.o
[ 13%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_euclidean_loss_layer.cu.o
[ 15%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_filter_layer.cu.o
[ 15%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_exp_layer.cu.o
[ 16%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_inner_product_layer.cu.o
[ 16%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_hdf5_data_layer.cu.o
[ 17%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_hdf5_output_layer.cu.o
[ 17%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_lrn_layer.cu.o
[ 17%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_log_layer.cu.o
[ 19%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_mvn_layer.cu.o
[ 19%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_im2col_layer.cu.o
[ 19%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_pooling_layer.cu.o
[ 19%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_power_layer.cu.o
[ 20%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_relu_layer.cu.o
[ 21%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_reduction_layer.cu.o
[ 21%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_prelu_layer.cu.o
[ 21%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_scale_layer.cu.o
[ 21%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_sigmoid_cross_entropy_loss_layer.cu.o
[ 23%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_sigmoid_layer.cu.o
[ 23%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_silence_layer.cu.o
[ 23%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_slice_layer.cu.o
[ 24%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_softmax_layer.cu.o
[ 24%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_split_layer.cu.o
[ 26%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_tanh_layer.cu.o
[ 26%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_threshold_layer.cu.o
[ 26%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_softmax_loss_layer.cu.o
[ 26%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/solvers/cuda_compile_1_generated_adadelta_solver.cu.o
[ 27%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/layers/cuda_compile_1_generated_tile_layer.cu.o
[ 27%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/solvers/cuda_compile_1_generated_adagrad_solver.cu.o
[ 28%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/solvers/cuda_compile_1_generated_adam_solver.cu.o
[ 28%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/solvers/cuda_compile_1_generated_rmsprop_solver.cu.o
[ 28%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/solvers/cuda_compile_1_generated_nesterov_solver.cu.o
[ 30%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/solvers/cuda_compile_1_generated_sgd_solver.cu.o
[ 30%] Building NVCC (Device) object src/caffe/CMakeFiles/cuda_compile_1.dir/util/cuda_compile_1_generated_im2col.cu.o
In file included from /softwares_nvidia/caffe/src/caffe/util/math_functions.cu:1:0:
/usr/local/cuda/include/math_functions.h:54:2: warning: warning “math_functions.h is an internal header file and must not be used directly. This file will be removed in a future CUDA release. Please use cuda_runtime_api.h or cuda_runtime.h instead.” [-Wcpp]
warning “math_functions.h is an internal header file and must not be used directly. This file will be removed in a future CUDA release. Please use cuda_runtime_api.h or cuda_runtime.h instead.”
^
In file included from /softwares_nvidia/caffe/src/caffe/util/math_functions.cu:1:0:
/usr/local/cuda/include/math_functions.h:54:2: warning: warning “math_functions.h is an internal header file and must not be used directly. This file will be removed in a future CUDA release. Please use cuda_runtime_api.h or cuda_runtime.h instead.” [-Wcpp]
warning “math_functions.h is an internal header file and must not be used directly. This file will be removed in a future CUDA release. Please use cuda_runtime_api.h or cuda_runtime.h instead.”
^
In file included from /softwares_nvidia/caffe/src/caffe/util/math_functions.cu:1:0:
/usr/local/cuda/include/math_functions.h:54:2: warning: warning “math_functions.h is an internal header file and must not be used directly. This file will be removed in a future CUDA release. Please use cuda_runtime_api.h or cuda_runtime.h instead.” [-Wcpp]
warning “math_functions.h is an internal header file and must not be used directly. This file will be removed in a future CUDA release. Please use cuda_runtime_api.h or cuda_runtime.h instead.”
^
In file included from /softwares_nvidia/caffe/src/caffe/util/math_functions.cu:1:0:
/usr/local/cuda/include/math_functions.h:54:2: warning: warning “math_functions.h is an internal header file and must not be used directly. This file will be removed in a future CUDA release. Please use cuda_runtime_api.h or cuda_runtime.h instead.” [-Wcpp]
warning “math_functions.h is an internal header file and must not be used directly. This file will be removed in a future CUDA release. Please use cuda_runtime_api.h or cuda_runtime.h instead.”
^
Scanning dependencies of target caffe
[ 31%] Building CXX object src/caffe/CMakeFiles/caffe.dir/blob.cpp.o
[ 31%] Building CXX object src/caffe/CMakeFiles/caffe.dir/common.cpp.o
[ 32%] Building CXX object src/caffe/CMakeFiles/caffe.dir/data_reader.cpp.o
[ 32%] Building CXX object src/caffe/CMakeFiles/caffe.dir/data_transformer.cpp.o
[ 32%] Building CXX object src/caffe/CMakeFiles/caffe.dir/internal_thread.cpp.o
[ 34%] Building CXX object src/caffe/CMakeFiles/caffe.dir/layer.cpp.o
[ 34%] Building CXX object src/caffe/CMakeFiles/caffe.dir/layer_factory.cpp.o
[ 34%] Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/absval_layer.cpp.o
[ 35%] Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/accuracy_layer.cpp.o
[ 35%] Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/argmax_layer.cpp.o
[ 36%] Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/base_conv_layer.cpp.o
[ 36%] Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/base_data_layer.cpp.o
[ 36%] Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/batch_norm_layer.cpp.o
[ 38%] Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/batch_reindex_layer.cpp.o
[ 38%] Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/bias_layer.cpp.o
[ 39%] Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/concat_layer.cpp.o
[ 39%] Building CXX object src/caffe/CMakeFiles/caffe.dir/layers/bnll_layer.cpp.o
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[ 79%] Building CXX object src/caffe/CMakeFiles/caffe.dir/util/io.cpp.o
[ 80%] Building CXX object src/caffe/CMakeFiles/caffe.dir/util/math_functions.cpp.o
[ 80%] Building CXX object src/caffe/CMakeFiles/caffe.dir/util/signal_handler.cpp.o
[ 80%] Building CXX object src/caffe/CMakeFiles/caffe.dir/util/upgrade_proto.cpp.o
[ 82%] Linking CXX shared library …/…/lib/libcaffe-nv.so
[ 82%] Built target caffe
Scanning dependencies of target device_query
Scanning dependencies of target caffe.bin
Scanning dependencies of target upgrade_solver_proto_text
Scanning dependencies of target test_net
Scanning dependencies of target train_net
Scanning dependencies of target compute_image_mean
Scanning dependencies of target convert_imageset
Scanning dependencies of target upgrade_net_proto_binary
Scanning dependencies of target upgrade_net_proto_text
Scanning dependencies of target extract_features
Scanning dependencies of target finetune_net
Scanning dependencies of target net_speed_benchmark
Scanning dependencies of target convert_cifar_data
Scanning dependencies of target convert_mnist_data
Scanning dependencies of target pycaffe
Scanning dependencies of target classification
Scanning dependencies of target convert_mnist_siamese_data
[ 82%] Building CXX object tools/CMakeFiles/device_query.dir/device_query.cpp.o
[ 82%] Building CXX object examples/CMakeFiles/convert_cifar_data.dir/cifar10/convert_cifar_data.cpp.o
[ 83%] Building CXX object tools/CMakeFiles/compute_image_mean.dir/compute_image_mean.cpp.o
[ 83%] Building CXX object tools/CMakeFiles/test_net.dir/test_net.cpp.o
[ 83%] Building CXX object tools/CMakeFiles/upgrade_solver_proto_text.dir/upgrade_solver_proto_text.cpp.o
[ 83%] Building CXX object tools/CMakeFiles/caffe.bin.dir/caffe.cpp.o
[ 83%] Building CXX object tools/CMakeFiles/train_net.dir/train_net.cpp.o
[ 83%] Building CXX object tools/CMakeFiles/finetune_net.dir/finetune_net.cpp.o
[ 83%] Building CXX object tools/CMakeFiles/upgrade_net_proto_text.dir/upgrade_net_proto_text.cpp.o
[ 84%] Building CXX object tools/CMakeFiles/upgrade_net_proto_binary.dir/upgrade_net_proto_binary.cpp.o
[ 84%] Building CXX object tools/CMakeFiles/extract_features.dir/extract_features.cpp.o
[ 84%] Building CXX object tools/CMakeFiles/net_speed_benchmark.dir/net_speed_benchmark.cpp.o
[ 86%] Building CXX object examples/CMakeFiles/convert_mnist_siamese_data.dir/siamese/convert_mnist_siamese_data.cpp.o
[ 86%] Building CXX object examples/CMakeFiles/convert_mnist_data.dir/mnist/convert_mnist_data.cpp.o
[ 86%] Building CXX object examples/CMakeFiles/classification.dir/cpp_classification/classification.cpp.o
[ 86%] Building CXX object tools/CMakeFiles/convert_imageset.dir/convert_imageset.cpp.o
[ 87%] Building CXX object python/CMakeFiles/pycaffe.dir/caffe/_caffe.cpp.o
[ 89%] Linking CXX executable device_query
[ 89%] Built target device_query
[ 89%] Linking CXX executable mnist/convert_mnist_data
[ 89%] Linking CXX executable siamese/convert_mnist_siamese_data
[ 90%] Linking CXX executable cifar10/convert_cifar_data
[ 90%] Linking CXX executable compute_image_mean
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTget_dataset_ndims' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_double’
…/lib/libcaffe-nv.so.0.15.14: undefined .reference. /tolib /libcaffeH5LTmake_dataset_int-'nv.so.0.15.14 :. .undefined/ libreference/ libcaffeto- nv.so.0.15.14: H5LTget_dataset_ndimsundefined’
reference. .to/ lib/H5LTread_dataset_floatlibcaffe'- nv.so.0.15.14.:. /undefinedlib /referencelibcaffe -tonv.so.0.15.14 : H5LTmake_dataset_doubleundefined’
reference. .to/ lib/H5LTmake_dataset_floatlibcaffe'- nv.so.0.15.14.:. /undefinedlib /referencelibcaffe -tonv.so.0.15.14 : H5LTmake_dataset_intundefined’
reference. .to/ lib/H5LTread_dataset_doublelibcaffe'- nv.so.0.15.14.:. /undefinedlib /referencelibcaffe -tonv.so.0.15.14 : H5LTread_dataset_floatundefined’
reference. .to/ lib/H5LTmake_dataset_stringlibcaffe'- nv.so.0.15.14.:. /undefinedlib /referencelibcaffe -tonv.so.0.15.14 : H5LTmake_dataset_floatundefined’
reference. .to/ lib/H5LTread_dataset_intlibcaffe'- nv.so.0.15.14.:. /undefinedlib /referencelibcaffe -tonv.so.0.15.14 : H5LTread_dataset_doubleundefined’
reference. .to/ lib/H5LTfind_datasetlibcaffe'- nv.so.0.15.14.:. /undefinedlib /referencelibcaffe -tonv.so.0.15.14 : H5LTmake_dataset_stringundefined’
reference. .to/ lib/H5LTget_dataset_infolibcaffe'- nv.so.0.15.14.:. /undefinedlib /referencelibcaffe -tonv.so.0.15.14 : H5LTread_dataset_intundefined’
reference. .to/ lib/H5LTread_dataset_stringlibcaffe'- nv.so.0.15.14: undefined reference to H5LTfind_dataset’
…/lib/libcaffe-nv.so.0.15.14: undefined reference collect2: error: ld returned 1 exit status
to H5LTget_dataset_info' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_string’
collect2: error: ld returned 1 exit status
examples/CMakeFiles/convert_mnist_siamese_data.dir/build.make:120: recipe for target ‘examples/siamese/convert_mnist_siamese_data’ failed
make[2]: *** [examples/siamese/convert_mnist_siamese_data] Error 1
examples/CMakeFiles/convert_mnist_data.dir/build.make:120: recipe for target ‘examples/mnist/convert_mnist_data’ failed
make[2]: *** [examples/mnist/convert_mnist_data] Error 1
CMakeFiles/Makefile2:958: recipe for target ‘examples/CMakeFiles/convert_mnist_data.dir/all’ failed
make[1]: *** [examples/CMakeFiles/convert_mnist_data.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs…
CMakeFiles/Makefile2:1034: recipe for target ‘examples/CMakeFiles/convert_mnist_siamese_data.dir/all’ failed
make[1]: *** [examples/CMakeFiles/convert_mnist_siamese_data.dir/all] Error 2
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTget_dataset_ndims' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_double’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_int' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_float’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_float' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_double’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_string' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_int’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTfind_dataset' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTget_dataset_info’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_string' collect2: error: ld returned 1 exit status examples/CMakeFiles/convert_cifar_data.dir/build.make:120: recipe for target 'examples/cifar10/convert_cifar_data' failed make[2]: *** [examples/cifar10/convert_cifar_data] Error 1 CMakeFiles/Makefile2:920: recipe for target 'examples/CMakeFiles/convert_cifar_data.dir/all' failed make[1]: *** [examples/CMakeFiles/convert_cifar_data.dir/all] Error 2 ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTget_dataset_ndims’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_double' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_int’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_float' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_float’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_double' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_string’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_int' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTfind_dataset’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTget_dataset_info' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_string’
collect2: error: ld returned 1 exit status
tools/CMakeFiles/compute_image_mean.dir/build.make:120: recipe for target ‘tools/compute_image_mean’ failed
make[2]: *** [tools/compute_image_mean] Error 1
CMakeFiles/Makefile2:630: recipe for target ‘tools/CMakeFiles/compute_image_mean.dir/all’ failed
make[1]: *** [tools/CMakeFiles/compute_image_mean.dir/all] Error 2
[ 91%] Linking CXX executable convert_imageset
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTget_dataset_ndims' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_double’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_int' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_float’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_float' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_double’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_string' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_int’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTfind_dataset' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTget_dataset_info’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_string' collect2: error: ld returned 1 exit status tools/CMakeFiles/convert_imageset.dir/build.make:120: recipe for target 'tools/convert_imageset' failed make[2]: *** [tools/convert_imageset] Error 1 CMakeFiles/Makefile2:668: recipe for target 'tools/CMakeFiles/convert_imageset.dir/all' failed make[1]: *** [tools/CMakeFiles/convert_imageset.dir/all] Error 2 [ 93%] Linking CXX executable test_net [ 93%] Linking CXX executable net_speed_benchmark [ 94%] Linking CXX executable upgrade_net_proto_text [ 95%] Linking CXX executable upgrade_solver_proto_text [ 97%] Linking CXX executable finetune_net [ 97%] Linking CXX executable upgrade_net_proto_binary [ 97%] Linking CXX executable train_net [ 97%] Built target test_net [ 97%] Built target net_speed_benchmark [ 97%] Built target finetune_net [ 97%] Built target train_net ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTget_dataset_ndims’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_double' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_int’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_float' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_float’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_double' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_string’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_int' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTfind_dataset’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTget_dataset_info' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_string’
collect2: error: ld returned 1 exit status
tools/CMakeFiles/upgrade_net_proto_text.dir/build.make:120: recipe for target ‘tools/upgrade_net_proto_text’ failed
make[2]: *** [tools/upgrade_net_proto_text] Error 1
CMakeFiles/Makefile2:744: recipe for target ‘tools/CMakeFiles/upgrade_net_proto_text.dir/all’ failed
make[1]: *** [tools/CMakeFiles/upgrade_net_proto_text.dir/all] Error 2
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTget_dataset_ndims' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_double’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_int' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_float’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_float' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_double’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_string' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_int’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTfind_dataset' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTget_dataset_info’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_string' collect2: error: ld returned 1 exit status tools/CMakeFiles/upgrade_solver_proto_text.dir/build.make:120: recipe for target 'tools/upgrade_solver_proto_text' failed make[2]: *** [tools/upgrade_solver_proto_text] Error 1 CMakeFiles/Makefile2:440: recipe for target 'tools/CMakeFiles/upgrade_solver_proto_text.dir/all' failed make[1]: *** [tools/CMakeFiles/upgrade_solver_proto_text.dir/all] Error 2 ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTget_dataset_ndims’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_double' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_int’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_float' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_float’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_double' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_string’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_int' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTfind_dataset’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTget_dataset_info' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_string’
collect2: error: ld returned 1 exit status
tools/CMakeFiles/upgrade_net_proto_binary.dir/build.make:120: recipe for target ‘tools/upgrade_net_proto_binary’ failed
make[2]: *** [tools/upgrade_net_proto_binary] Error 1
CMakeFiles/Makefile2:706: recipe for target ‘tools/CMakeFiles/upgrade_net_proto_binary.dir/all’ failed
make[1]: *** [tools/CMakeFiles/upgrade_net_proto_binary.dir/all] Error 2
[ 98%] Linking CXX executable extract_features
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTget_dataset_ndims' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_double’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_int' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_float’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_float' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_double’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_string' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_int’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTfind_dataset' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTget_dataset_info’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_string' collect2: error: ld returned 1 exit status tools/CMakeFiles/extract_features.dir/build.make:120: recipe for target 'tools/extract_features' failed make[2]: *** [tools/extract_features] Error 1 CMakeFiles/Makefile2:782: recipe for target 'tools/CMakeFiles/extract_features.dir/all' failed make[1]: *** [tools/CMakeFiles/extract_features.dir/all] Error 2 [ 98%] Linking CXX executable cpp_classification/classification ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTget_dataset_ndims’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_double' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_int’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_float' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_float’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_double' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_string’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_int' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTfind_dataset’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTget_dataset_info' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_string’
collect2: error: ld returned 1 exit status
examples/CMakeFiles/classification.dir/build.make:120: recipe for target ‘examples/cpp_classification/classification’ failed
make[2]: *** [examples/cpp_classification/classification] Error 1
CMakeFiles/Makefile2:996: recipe for target ‘examples/CMakeFiles/classification.dir/all’ failed
make[1]: *** [examples/CMakeFiles/classification.dir/all] Error 2
[100%] Linking CXX executable caffe
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTget_dataset_ndims' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_double’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_int' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_float’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_float' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_double’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTmake_dataset_string' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTread_dataset_int’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTfind_dataset' ../lib/libcaffe-nv.so.0.15.14: undefined reference to H5LTget_dataset_info’
…/lib/libcaffe-nv.so.0.15.14: undefined reference to `H5LTread_dataset_string’
collect2: error: ld returned 1 exit status
tools/CMakeFiles/caffe.bin.dir/build.make:120: recipe for target ‘tools/caffe’ failed
make[2]: *** [tools/caffe] Error 1
CMakeFiles/Makefile2:516: recipe for target ‘tools/CMakeFiles/caffe.bin.dir/all’ failed
make[1]: *** [tools/CMakeFiles/caffe.bin.dir/all] Error 2
[100%] Linking CXX shared library …/lib/_caffe.so
Creating symlink /softwares_nvidia/caffe/python/caffe/_caffe.so → /softwares_nvidia/caffe/build/lib/_caffe.so
[100%] Built target pycaffe
Makefile:129: recipe for target ‘all’ failed
make: *** [all] Error 2

10

To resolved this problem i need to:

edit “caffe/cmake/Dependencies.cmake”, at line 29

  1. — list(APPEND Caffe_LINKER_LIBS ${HDF5_LIBRARIES})
  2. +++ list(APPEND Caffe_LINKER_LIBS ${HDF5_LIBRARIES} ${HDF5_HL_LIBRARIES})
11

After installing everything, I tried to log in the graphical interface and I can not.

When I enter the password it tries to login but it returns to the login screen, could you help me?