Unable to download Keras

noblehusein6 · July 31, 2020, 3:59pm

Im trying to download Keras on my jetson TX2 using,
pip3 install keras. I’ve installed tensor flow without any issues. but this is giving me an error that I cannot find anywhere else
The error is,

Command “/usr/bin/python3 -u -c “import setuptools, tokenize;file=‘/tmp/pip-build-gmceye5c/scipy/setup.py’;f=getattr(tokenize, ‘open’, open)(file);code=f.read().replace(‘\r\n’, ‘\n’);f.close();exec(compile(code, file, ‘exec’))” install --record /tmp/pip-t10amg32-record/install-record.txt --single-version-externally-managed --compile --user --prefix=” failed with error code 1 in /tmp/pip-build-gmceye5c/scipy/

and on the terminal some of the few other errors that pop up are-
Failed building wheel for h5py
Failed cleaning build dir for numpy

Failed building wheel for numpy
failed cleaning build dir for scipy
Failed building wheel for scipy

would appreciate if someone could help me out! thanks

noblehusein6 · July 31, 2020, 4:42pm

So it turns out even Tensor flow wasn’t actually installed and is throwing the same errors like the keras.

noblehusein6 · August 1, 2020, 5:30am

husein@husein-desktop:~$ pip3 install keras
Collecting keras
Using cached https://files.pythonhosted.org/packages/44/e1/dc0757b20b56c980b5553c1b5c4c32d378c7055ab7bfa92006801ad359ab/Keras-2.4.3-py2.py3-none-any.whl
Collecting h5py (from keras)
Using cached https://files.pythonhosted.org/packages/5f/97/a58afbcf40e8abecededd9512978b4e4915374e5b80049af082f49cebe9a/h5py-2.10.0.tar.gz
Collecting pyyaml (from keras)
Collecting scipy>=0.14 (from keras)
Using cached https://files.pythonhosted.org/packages/53/10/776750d57ade26522478a92a2e14035868624a6a62f4157b0cc5abd4a980/scipy-1.5.2.tar.gz
Collecting numpy>=1.9.1 (from keras)
Using cached https://files.pythonhosted.org/packages/2c/2f/7b4d0b639a42636362827e611cfeba67975ec875ae036dd846d459d52652/numpy-1.19.1.zip
Collecting six (from h5py->keras)
Using cached https://files.pythonhosted.org/packages/ee/ff/48bde5c0f013094d729fe4b0316ba2a24774b3ff1c52d924a8a4cb04078a/six-1.15.0-py2.py3-none-any.whl
Building wheels for collected packages: h5py, scipy, numpy
Running setup.py bdist_wheel for h5py … error
Complete output from command /usr/bin/python3 -u -c “import setuptools, tokenize;file=‘/tmp/pip-build-k0p9t7t3/h5py/setup.py’;f=getattr(tokenize, ‘open’, open)(file);code=f.read().replace(‘\r\n’, ‘\n’);f.close();exec(compile(code, file, ‘exec’))” bdist_wheel -d /tmp/tmp8fw6ne5tpip-wheel- --python-tag cp36:
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-aarch64-3.6
creating build/lib.linux-aarch64-3.6/h5py
copying h5py/highlevel.py → build/lib.linux-aarch64-3.6/h5py
copying h5py/ipy_completer.py → build/lib.linux-aarch64-3.6/h5py
copying h5py/init.py → build/lib.linux-aarch64-3.6/h5py
copying h5py/h5py_warnings.py → build/lib.linux-aarch64-3.6/h5py
copying h5py/version.py → build/lib.linux-aarch64-3.6/h5py
creating build/lib.linux-aarch64-3.6/h5py/_hl
copying h5py/_hl/attrs.py → build/lib.linux-aarch64-3.6/h5py/_hl
copying h5py/_hl/selections.py → build/lib.linux-aarch64-3.6/h5py/_hl
copying h5py/_hl/filters.py → build/lib.linux-aarch64-3.6/h5py/_hl
copying h5py/_hl/datatype.py → build/lib.linux-aarch64-3.6/h5py/_hl
copying h5py/_hl/group.py → build/lib.linux-aarch64-3.6/h5py/_hl
copying h5py/_hl/dims.py → build/lib.linux-aarch64-3.6/h5py/_hl
copying h5py/_hl/base.py → build/lib.linux-aarch64-3.6/h5py/_hl
copying h5py/_hl/vds.py → build/lib.linux-aarch64-3.6/h5py/_hl
copying h5py/_hl/compat.py → build/lib.linux-aarch64-3.6/h5py/_hl
copying h5py/_hl/selections2.py → build/lib.linux-aarch64-3.6/h5py/_hl
copying h5py/_hl/files.py → build/lib.linux-aarch64-3.6/h5py/_hl
copying h5py/_hl/init.py → build/lib.linux-aarch64-3.6/h5py/_hl
copying h5py/_hl/dataset.py → build/lib.linux-aarch64-3.6/h5py/_hl
creating build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_h5.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_h5t.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_h5pl.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_dataset.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_attribute_create.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_threads.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_base.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_deprecation.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_h5d_direct_chunk.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_objects.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_file2.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_completions.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_file.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_slicing.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_dtype.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/common.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_group.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_datatype.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_dimension_scales.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_file_image.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_h5p.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_dataset_swmr.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_selections.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_filters.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_attrs.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_attrs_data.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/init.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_dataset_getitem.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_dims_dimensionproxy.py → build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_h5f.py → build/lib.linux-aarch64-3.6/h5py/tests
creating build/lib.linux-aarch64-3.6/h5py/tests/test_vds
copying h5py/tests/test_vds/test_highlevel_vds.py → build/lib.linux-aarch64-3.6/h5py/tests/test_vds
copying h5py/tests/test_vds/test_lowlevel_vds.py → build/lib.linux-aarch64-3.6/h5py/tests/test_vds
copying h5py/tests/test_vds/init.py → build/lib.linux-aarch64-3.6/h5py/tests/test_vds
copying h5py/tests/test_vds/test_virtual_source.py → build/lib.linux-aarch64-3.6/h5py/tests/test_vds
running build_ext
Loading library to get version: /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so
Autodetected HDF5 1.10.0

                     Summary of the h5py configuration

  Path to HDF5: None
  HDF5 Version: '1.10.0'
   MPI Enabled: False

Rebuild Required: True

Executing api_gen rebuild of defs
Executing cythonize()
[ 1/23] Cythonizing /tmp/pip-build-k0p9t7t3/h5py/h5py/_conv.pyx
warning: h5py/api_types_hdf5.pxd:418:2: ‘H5D_layout_t’ redeclared
warning: h5py/api_types_hdf5.pxd:425:2: ‘H5D_alloc_time_t’ redeclared
warning: h5py/api_types_hdf5.pxd:432:2: ‘H5D_space_status_t’ redeclared
warning: h5py/api_types_hdf5.pxd:438:2: ‘H5D_fill_time_t’ redeclared
warning: h5py/api_types_hdf5.pxd:444:2: ‘H5D_fill_value_t’ redeclared
warning: h5py/api_types_hdf5.pxd:456:7: ‘H5F_close_degree_t’ redeclared
warning: h5py/api_types_hdf5.pxd:462:2: ‘H5FD_mem_t’ redeclared
warning: h5py/api_types_hdf5.pxd:560:2: ‘H5T_cset_t’ redeclared
warning: h5py/api_types_hdf5.pxd:739:7: ‘H5Z_EDC_t’ redeclared
warning: h5py/api_types_hdf5.pxd:419:4: ‘H5D_LAYOUT_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:420:4: ‘H5D_COMPACT’ redeclared
warning: h5py/api_types_hdf5.pxd:421:4: ‘H5D_CONTIGUOUS’ redeclared
warning: h5py/api_types_hdf5.pxd:422:4: ‘H5D_CHUNKED’ redeclared
warning: h5py/api_types_hdf5.pxd:423:4: ‘H5D_NLAYOUTS’ redeclared
warning: h5py/api_types_hdf5.pxd:426:4: ‘H5D_ALLOC_TIME_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:427:4: ‘H5D_ALLOC_TIME_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:428:4: ‘H5D_ALLOC_TIME_EARLY’ redeclared
warning: h5py/api_types_hdf5.pxd:429:4: ‘H5D_ALLOC_TIME_LATE’ redeclared
warning: h5py/api_types_hdf5.pxd:430:4: ‘H5D_ALLOC_TIME_INCR’ redeclared
warning: h5py/api_types_hdf5.pxd:433:4: ‘H5D_SPACE_STATUS_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:434:4: ‘H5D_SPACE_STATUS_NOT_ALLOCATED’ redeclared
warning: h5py/api_types_hdf5.pxd:435:4: ‘H5D_SPACE_STATUS_PART_ALLOCATED’ redeclared
warning: h5py/api_types_hdf5.pxd:436:4: ‘H5D_SPACE_STATUS_ALLOCATED’ redeclared
warning: h5py/api_types_hdf5.pxd:439:4: ‘H5D_FILL_TIME_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:440:4: ‘H5D_FILL_TIME_ALLOC’ redeclared
warning: h5py/api_types_hdf5.pxd:441:4: ‘H5D_FILL_TIME_NEVER’ redeclared
warning: h5py/api_types_hdf5.pxd:442:4: ‘H5D_FILL_TIME_IFSET’ redeclared
warning: h5py/api_types_hdf5.pxd:445:4: ‘H5D_FILL_VALUE_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:446:4: ‘H5D_FILL_VALUE_UNDEFINED’ redeclared
warning: h5py/api_types_hdf5.pxd:447:4: ‘H5D_FILL_VALUE_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:448:4: ‘H5D_FILL_VALUE_USER_DEFINED’ redeclared
warning: h5py/api_types_hdf5.pxd:457:4: ‘H5F_CLOSE_WEAK’ redeclared
warning: h5py/api_types_hdf5.pxd:458:4: ‘H5F_CLOSE_SEMI’ redeclared
warning: h5py/api_types_hdf5.pxd:459:4: ‘H5F_CLOSE_STRONG’ redeclared
warning: h5py/api_types_hdf5.pxd:460:4: ‘H5F_CLOSE_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:463:4: ‘H5FD_MEM_NOLIST’ redeclared
warning: h5py/api_types_hdf5.pxd:464:4: ‘H5FD_MEM_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:465:4: ‘H5FD_MEM_SUPER’ redeclared
warning: h5py/api_types_hdf5.pxd:466:4: ‘H5FD_MEM_BTREE’ redeclared
warning: h5py/api_types_hdf5.pxd:467:4: ‘H5FD_MEM_DRAW’ redeclared
warning: h5py/api_types_hdf5.pxd:468:4: ‘H5FD_MEM_GHEAP’ redeclared
warning: h5py/api_types_hdf5.pxd:469:4: ‘H5FD_MEM_LHEAP’ redeclared
warning: h5py/api_types_hdf5.pxd:470:4: ‘H5FD_MEM_OHDR’ redeclared
warning: h5py/api_types_hdf5.pxd:471:4: ‘H5FD_MEM_NTYPES’ redeclared
warning: h5py/api_types_hdf5.pxd:561:4: ‘H5T_CSET_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:562:4: ‘H5T_CSET_ASCII’ redeclared
warning: h5py/api_types_hdf5.pxd:705:2: ‘H5Z_filter_t’ redeclared
warning: h5py/api_types_hdf5.pxd:740:6: ‘H5Z_ERROR_EDC’ redeclared
warning: h5py/api_types_hdf5.pxd:741:6: ‘H5Z_DISABLE_EDC’ redeclared
warning: h5py/api_types_hdf5.pxd:742:6: ‘H5Z_ENABLE_EDC’ redeclared
warning: h5py/api_types_hdf5.pxd:743:6: ‘H5Z_NO_EDC’ redeclared
[ 2/23] Cythonizing /tmp/pip-build-k0p9t7t3/h5py/h5py/_errors.pyx
warning: h5py/api_types_hdf5.pxd:418:2: ‘H5D_layout_t’ redeclared
warning: h5py/api_types_hdf5.pxd:425:2: ‘H5D_alloc_time_t’ redeclared
warning: h5py/api_types_hdf5.pxd:432:2: ‘H5D_space_status_t’ redeclared
warning: h5py/api_types_hdf5.pxd:438:2: ‘H5D_fill_time_t’ redeclared
warning: h5py/api_types_hdf5.pxd:444:2: ‘H5D_fill_value_t’ redeclared
warning: h5py/api_types_hdf5.pxd:456:7: ‘H5F_close_degree_t’ redeclared
warning: h5py/api_types_hdf5.pxd:462:2: ‘H5FD_mem_t’ redeclared
warning: h5py/api_types_hdf5.pxd:560:2: ‘H5T_cset_t’ redeclared
warning: h5py/api_types_hdf5.pxd:739:7: ‘H5Z_EDC_t’ redeclared
warning: h5py/api_types_hdf5.pxd:419:4: ‘H5D_LAYOUT_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:420:4: ‘H5D_COMPACT’ redeclared
warning: h5py/api_types_hdf5.pxd:421:4: ‘H5D_CONTIGUOUS’ redeclared
warning: h5py/api_types_hdf5.pxd:422:4: ‘H5D_CHUNKED’ redeclared
warning: h5py/api_types_hdf5.pxd:423:4: ‘H5D_NLAYOUTS’ redeclared
warning: h5py/api_types_hdf5.pxd:426:4: ‘H5D_ALLOC_TIME_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:427:4: ‘H5D_ALLOC_TIME_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:428:4: ‘H5D_ALLOC_TIME_EARLY’ redeclared
warning: h5py/api_types_hdf5.pxd:429:4: ‘H5D_ALLOC_TIME_LATE’ redeclared
warning: h5py/api_types_hdf5.pxd:430:4: ‘H5D_ALLOC_TIME_INCR’ redeclared
warning: h5py/api_types_hdf5.pxd:433:4: ‘H5D_SPACE_STATUS_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:434:4: ‘H5D_SPACE_STATUS_NOT_ALLOCATED’ redeclared
warning: h5py/api_types_hdf5.pxd:435:4: ‘H5D_SPACE_STATUS_PART_ALLOCATED’ redeclared
warning: h5py/api_types_hdf5.pxd:436:4: ‘H5D_SPACE_STATUS_ALLOCATED’ redeclared
warning: h5py/api_types_hdf5.pxd:439:4: ‘H5D_FILL_TIME_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:440:4: ‘H5D_FILL_TIME_ALLOC’ redeclared
warning: h5py/api_types_hdf5.pxd:441:4: ‘H5D_FILL_TIME_NEVER’ redeclared
warning: h5py/api_types_hdf5.pxd:442:4: ‘H5D_FILL_TIME_IFSET’ redeclared
warning: h5py/api_types_hdf5.pxd:445:4: ‘H5D_FILL_VALUE_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:446:4: ‘H5D_FILL_VALUE_UNDEFINED’ redeclared
warning: h5py/api_types_hdf5.pxd:447:4: ‘H5D_FILL_VALUE_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:448:4: ‘H5D_FILL_VALUE_USER_DEFINED’ redeclared
warning: h5py/api_types_hdf5.pxd:457:4: ‘H5F_CLOSE_WEAK’ redeclared
warning: h5py/api_types_hdf5.pxd:458:4: ‘H5F_CLOSE_SEMI’ redeclared
warning: h5py/api_types_hdf5.pxd:459:4: ‘H5F_CLOSE_STRONG’ redeclared
warning: h5py/api_types_hdf5.pxd:460:4: ‘H5F_CLOSE_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:463:4: ‘H5FD_MEM_NOLIST’ redeclared
warning: h5py/api_types_hdf5.pxd:464:4: ‘H5FD_MEM_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:465:4: ‘H5FD_MEM_SUPER’ redeclared
warning: h5py/api_types_hdf5.pxd:466:4: ‘H5FD_MEM_BTREE’ redeclared
warning: h5py/api_types_hdf5.pxd:467:4: ‘H5FD_MEM_DRAW’ redeclared
warning: h5py/api_types_hdf5.pxd:468:4: ‘H5FD_MEM_GHEAP’ redeclared
warning: h5py/api_types_hdf5.pxd:469:4: ‘H5FD_MEM_LHEAP’ redeclared
warning: h5py/api_types_hdf5.pxd:470:4: ‘H5FD_MEM_OHDR’ redeclared
warning: h5py/api_types_hdf5.pxd:471:4: ‘H5FD_MEM_NTYPES’ redeclared
warning: h5py/api_types_hdf5.pxd:561:4: ‘H5T_CSET_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:562:4: ‘H5T_CSET_ASCII’ redeclared
warning: h5py/api_types_hdf5.pxd:705:2: ‘H5Z_filter_t’ redeclared
warning: h5py/api_types_hdf5.pxd:740:6: ‘H5Z_ERROR_EDC’ redeclared
warning: h5py/api_types_hdf5.pxd:741:6: ‘H5Z_DISABLE_EDC’ redeclared
warning: h5py/api_types_hdf5.pxd:742:6: ‘H5Z_ENABLE_EDC’ redeclared
warning: h5py/api_types_hdf5.pxd:743:6: ‘H5Z_NO_EDC’ redeclared
[ 3/23] Cythonizing /tmp/pip-build-k0p9t7t3/h5py/h5py/_objects.pyx
warning: h5py/api_types_hdf5.pxd:418:2: ‘H5D_layout_t’ redeclared
warning: h5py/api_types_hdf5.pxd:425:2: ‘H5D_alloc_time_t’ redeclared
warning: h5py/api_types_hdf5.pxd:432:2: ‘H5D_space_status_t’ redeclared
warning: h5py/api_types_hdf5.pxd:438:2: ‘H5D_fill_time_t’ redeclared
warning: h5py/api_types_hdf5.pxd:444:2: ‘H5D_fill_value_t’ redeclared
warning: h5py/api_types_hdf5.pxd:456:7: ‘H5F_close_degree_t’ redeclared
warning: h5py/api_types_hdf5.pxd:462:2: ‘H5FD_mem_t’ redeclared
warning: h5py/api_types_hdf5.pxd:560:2: ‘H5T_cset_t’ redeclared
warning: h5py/api_types_hdf5.pxd:739:7: ‘H5Z_EDC_t’ redeclared
warning: h5py/api_types_hdf5.pxd:419:4: ‘H5D_LAYOUT_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:420:4: ‘H5D_COMPACT’ redeclared
warning: h5py/api_types_hdf5.pxd:421:4: ‘H5D_CONTIGUOUS’ redeclared
warning: h5py/api_types_hdf5.pxd:422:4: ‘H5D_CHUNKED’ redeclared
warning: h5py/api_types_hdf5.pxd:423:4: ‘H5D_NLAYOUTS’ redeclared
warning: h5py/api_types_hdf5.pxd:426:4: ‘H5D_ALLOC_TIME_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:427:4: ‘H5D_ALLOC_TIME_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:428:4: ‘H5D_ALLOC_TIME_EARLY’ redeclared
warning: h5py/api_types_hdf5.pxd:429:4: ‘H5D_ALLOC_TIME_LATE’ redeclared
warning: h5py/api_types_hdf5.pxd:430:4: ‘H5D_ALLOC_TIME_INCR’ redeclared
warning: h5py/api_types_hdf5.pxd:433:4: ‘H5D_SPACE_STATUS_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:434:4: ‘H5D_SPACE_STATUS_NOT_ALLOCATED’ redeclared
warning: h5py/api_types_hdf5.pxd:435:4: ‘H5D_SPACE_STATUS_PART_ALLOCATED’ redeclared
warning: h5py/api_types_hdf5.pxd:436:4: ‘H5D_SPACE_STATUS_ALLOCATED’ redeclared
warning: h5py/api_types_hdf5.pxd:439:4: ‘H5D_FILL_TIME_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:440:4: ‘H5D_FILL_TIME_ALLOC’ redeclared
warning: h5py/api_types_hdf5.pxd:441:4: ‘H5D_FILL_TIME_NEVER’ redeclared
warning: h5py/api_types_hdf5.pxd:442:4: ‘H5D_FILL_TIME_IFSET’ redeclared
warning: h5py/api_types_hdf5.pxd:445:4: ‘H5D_FILL_VALUE_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:446:4: ‘H5D_FILL_VALUE_UNDEFINED’ redeclared
warning: h5py/api_types_hdf5.pxd:447:4: ‘H5D_FILL_VALUE_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:448:4: ‘H5D_FILL_VALUE_USER_DEFINED’ redeclared
warning: h5py/api_types_hdf5.pxd:457:4: ‘H5F_CLOSE_WEAK’ redeclared
warning: h5py/api_types_hdf5.pxd:458:4: ‘H5F_CLOSE_SEMI’ redeclared
warning: h5py/api_types_hdf5.pxd:459:4: ‘H5F_CLOSE_STRONG’ redeclared
warning: h5py/api_types_hdf5.pxd:460:4: ‘H5F_CLOSE_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:463:4: ‘H5FD_MEM_NOLIST’ redeclared
warning: h5py/api_types_hdf5.pxd:464:4: ‘H5FD_MEM_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:465:4: ‘H5FD_MEM_SUPER’ redeclared
warning: h5py/api_types_hdf5.pxd:466:4: ‘H5FD_MEM_BTREE’ redeclared
warning: h5py/api_types_hdf5.pxd:467:4: ‘H5FD_MEM_DRAW’ redeclared
warning: h5py/api_types_hdf5.pxd:468:4: ‘H5FD_MEM_GHEAP’ redeclared
warning: h5py/api_types_hdf5.pxd:469:4: ‘H5FD_MEM_LHEAP’ redeclared
warning: h5py/api_types_hdf5.pxd:470:4: ‘H5FD_MEM_OHDR’ redeclared
warning: h5py/api_types_hdf5.pxd:471:4: ‘H5FD_MEM_NTYPES’ redeclared
warning: h5py/api_types_hdf5.pxd:561:4: ‘H5T_CSET_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:562:4: ‘H5T_CSET_ASCII’ redeclared
warning: h5py/api_types_hdf5.pxd:705:2: ‘H5Z_filter_t’ redeclared
warning: h5py/api_types_hdf5.pxd:740:6: ‘H5Z_ERROR_EDC’ redeclared
warning: h5py/api_types_hdf5.pxd:741:6: ‘H5Z_DISABLE_EDC’ redeclared
warning: h5py/api_types_hdf5.pxd:742:6: ‘H5Z_ENABLE_EDC’ redeclared
warning: h5py/api_types_hdf5.pxd:743:6: ‘H5Z_NO_EDC’ redeclared
[ 4/23] Cythonizing /tmp/pip-build-k0p9t7t3/h5py/h5py/_proxy.pyx
warning: h5py/api_types_hdf5.pxd:418:2: ‘H5D_layout_t’ redeclared
warning: h5py/api_types_hdf5.pxd:425:2: ‘H5D_alloc_time_t’ redeclared
warning: h5py/api_types_hdf5.pxd:432:2: ‘H5D_space_status_t’ redeclared
warning: h5py/api_types_hdf5.pxd:438:2: ‘H5D_fill_time_t’ redeclared
warning: h5py/api_types_hdf5.pxd:444:2: ‘H5D_fill_value_t’ redeclared
warning: h5py/api_types_hdf5.pxd:456:7: ‘H5F_close_degree_t’ redeclared
warning: h5py/api_types_hdf5.pxd:462:2: ‘H5FD_mem_t’ redeclared
warning: h5py/api_types_hdf5.pxd:560:2: ‘H5T_cset_t’ redeclared
warning: h5py/api_types_hdf5.pxd:739:7: ‘H5Z_EDC_t’ redeclared
warning: h5py/api_types_hdf5.pxd:419:4: ‘H5D_LAYOUT_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:420:4: ‘H5D_COMPACT’ redeclared
warning: h5py/api_types_hdf5.pxd:421:4: ‘H5D_CONTIGUOUS’ redeclared
warning: h5py/api_types_hdf5.pxd:422:4: ‘H5D_CHUNKED’ redeclared
warning: h5py/api_types_hdf5.pxd:423:4: ‘H5D_NLAYOUTS’ redeclared
warning: h5py/api_types_hdf5.pxd:426:4: ‘H5D_ALLOC_TIME_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:427:4: ‘H5D_ALLOC_TIME_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:428:4: ‘H5D_ALLOC_TIME_EARLY’ redeclared
warning: h5py/api_types_hdf5.pxd:429:4: ‘H5D_ALLOC_TIME_LATE’ redeclared
warning: h5py/api_types_hdf5.pxd:430:4: ‘H5D_ALLOC_TIME_INCR’ redeclared
warning: h5py/api_types_hdf5.pxd:433:4: ‘H5D_SPACE_STATUS_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:434:4: ‘H5D_SPACE_STATUS_NOT_ALLOCATED’ redeclared
warning: h5py/api_types_hdf5.pxd:435:4: ‘H5D_SPACE_STATUS_PART_ALLOCATED’ redeclared
warning: h5py/api_types_hdf5.pxd:436:4: ‘H5D_SPACE_STATUS_ALLOCATED’ redeclared
warning: h5py/api_types_hdf5.pxd:439:4: ‘H5D_FILL_TIME_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:440:4: ‘H5D_FILL_TIME_ALLOC’ redeclared
warning: h5py/api_types_hdf5.pxd:441:4: ‘H5D_FILL_TIME_NEVER’ redeclared
warning: h5py/api_types_hdf5.pxd:442:4: ‘H5D_FILL_TIME_IFSET’ redeclared
warning: h5py/api_types_hdf5.pxd:445:4: ‘H5D_FILL_VALUE_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:446:4: ‘H5D_FILL_VALUE_UNDEFINED’ redeclared
warning: h5py/api_types_hdf5.pxd:447:4: ‘H5D_FILL_VALUE_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:448:4: ‘H5D_FILL_VALUE_USER_DEFINED’ redeclared
warning: h5py/api_types_hdf5.pxd:457:4: ‘H5F_CLOSE_WEAK’ redeclared
warning: h5py/api_types_hdf5.pxd:458:4: ‘H5F_CLOSE_SEMI’ redeclared
warning: h5py/api_types_hdf5.pxd:459:4: ‘H5F_CLOSE_STRONG’ redeclared
warning: h5py/api_types_hdf5.pxd:460:4: ‘H5F_CLOSE_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:463:4: ‘H5FD_MEM_NOLIST’ redeclared
warning: h5py/api_types_hdf5.pxd:464:4: ‘H5FD_MEM_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:465:4: ‘H5FD_MEM_SUPER’ redeclared
warning: h5py/api_types_hdf5.pxd:466:4: ‘H5FD_MEM_BTREE’ redeclared
warning: h5py/api_types_hdf5.pxd:467:4: ‘H5FD_MEM_DRAW’ redeclared
warning: h5py/api_types_hdf5.pxd:468:4: ‘H5FD_MEM_GHEAP’ redeclared
warning: h5py/api_types_hdf5.pxd:469:4: ‘H5FD_MEM_LHEAP’ redeclared
warning: h5py/api_types_hdf5.pxd:470:4: ‘H5FD_MEM_OHDR’ redeclared
warning: h5py/api_types_hdf5.pxd:471:4: ‘H5FD_MEM_NTYPES’ redeclared
warning: h5py/api_types_hdf5.pxd:561:4: ‘H5T_CSET_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:562:4: ‘H5T_CSET_ASCII’ redeclared
warning: h5py/api_types_hdf5.pxd:705:2: ‘H5Z_filter_t’ redeclared
warning: h5py/api_types_hdf5.pxd:740:6: ‘H5Z_ERROR_EDC’ redeclared
warning: h5py/api_types_hdf5.pxd:741:6: ‘H5Z_DISABLE_EDC’ redeclared
warning: h5py/api_types_hdf5.pxd:742:6: ‘H5Z_ENABLE_EDC’ redeclared
warning: h5py/api_types_hdf5.pxd:743:6: ‘H5Z_NO_EDC’ redeclared
[ 5/23] Cythonizing /tmp/pip-build-k0p9t7t3/h5py/h5py/defs.pyx
warning: h5py/api_types_hdf5.pxd:418:2: ‘H5D_layout_t’ redeclared
warning: h5py/api_types_hdf5.pxd:425:2: ‘H5D_alloc_time_t’ redeclared
warning: h5py/api_types_hdf5.pxd:432:2: ‘H5D_space_status_t’ redeclared
warning: h5py/api_types_hdf5.pxd:438:2: ‘H5D_fill_time_t’ redeclared
warning: h5py/api_types_hdf5.pxd:444:2: ‘H5D_fill_value_t’ redeclared
warning: h5py/api_types_hdf5.pxd:456:7: ‘H5F_close_degree_t’ redeclared
warning: h5py/api_types_hdf5.pxd:462:2: ‘H5FD_mem_t’ redeclared
warning: h5py/api_types_hdf5.pxd:560:2: ‘H5T_cset_t’ redeclared
warning: h5py/api_types_hdf5.pxd:739:7: ‘H5Z_EDC_t’ redeclared
warning: h5py/api_types_hdf5.pxd:419:4: ‘H5D_LAYOUT_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:420:4: ‘H5D_COMPACT’ redeclared
warning: h5py/api_types_hdf5.pxd:421:4: ‘H5D_CONTIGUOUS’ redeclared
warning: h5py/api_types_hdf5.pxd:422:4: ‘H5D_CHUNKED’ redeclared
warning: h5py/api_types_hdf5.pxd:423:4: ‘H5D_NLAYOUTS’ redeclared
warning: h5py/api_types_hdf5.pxd:426:4: ‘H5D_ALLOC_TIME_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:427:4: ‘H5D_ALLOC_TIME_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:428:4: ‘H5D_ALLOC_TIME_EARLY’ redeclared
warning: h5py/api_types_hdf5.pxd:429:4: ‘H5D_ALLOC_TIME_LATE’ redeclared
warning: h5py/api_types_hdf5.pxd:430:4: ‘H5D_ALLOC_TIME_INCR’ redeclared
warning: h5py/api_types_hdf5.pxd:433:4: ‘H5D_SPACE_STATUS_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:434:4: ‘H5D_SPACE_STATUS_NOT_ALLOCATED’ redeclared
warning: h5py/api_types_hdf5.pxd:435:4: ‘H5D_SPACE_STATUS_PART_ALLOCATED’ redeclared
warning: h5py/api_types_hdf5.pxd:436:4: ‘H5D_SPACE_STATUS_ALLOCATED’ redeclared
warning: h5py/api_types_hdf5.pxd:439:4: ‘H5D_FILL_TIME_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:440:4: ‘H5D_FILL_TIME_ALLOC’ redeclared
warning: h5py/api_types_hdf5.pxd:441:4: ‘H5D_FILL_TIME_NEVER’ redeclared
warning: h5py/api_types_hdf5.pxd:442:4: ‘H5D_FILL_TIME_IFSET’ redeclared
warning: h5py/api_types_hdf5.pxd:445:4: ‘H5D_FILL_VALUE_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:446:4: ‘H5D_FILL_VALUE_UNDEFINED’ redeclared
warning: h5py/api_types_hdf5.pxd:447:4: ‘H5D_FILL_VALUE_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:448:4: ‘H5D_FILL_VALUE_USER_DEFINED’ redeclared
warning: h5py/api_types_hdf5.pxd:457:4: ‘H5F_CLOSE_WEAK’ redeclared
warning: h5py/api_types_hdf5.pxd:458:4: ‘H5F_CLOSE_SEMI’ redeclared
warning: h5py/api_types_hdf5.pxd:459:4: ‘H5F_CLOSE_STRONG’ redeclared
warning: h5py/api_types_hdf5.pxd:460:4: ‘H5F_CLOSE_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:463:4: ‘H5FD_MEM_NOLIST’ redeclared
warning: h5py/api_types_hdf5.pxd:464:4: ‘H5FD_MEM_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:465:4: ‘H5FD_MEM_SUPER’ redeclared
warning: h5py/api_types_hdf5.pxd:466:4: ‘H5FD_MEM_BTREE’ redeclared
warning: h5py/api_types_hdf5.pxd:467:4: ‘H5FD_MEM_DRAW’ redeclared
warning: h5py/api_types_hdf5.pxd:468:4: ‘H5FD_MEM_GHEAP’ redeclared
warning: h5py/api_types_hdf5.pxd:469:4: ‘H5FD_MEM_LHEAP’ redeclared
warning: h5py/api_types_hdf5.pxd:470:4: ‘H5FD_MEM_OHDR’ redeclared
warning: h5py/api_types_hdf5.pxd:471:4: ‘H5FD_MEM_NTYPES’ redeclared
warning: h5py/api_types_hdf5.pxd:561:4: ‘H5T_CSET_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:562:4: ‘H5T_CSET_ASCII’ redeclared
warning: h5py/api_types_hdf5.pxd:705:2: ‘H5Z_filter_t’ redeclared
warning: h5py/api_types_hdf5.pxd:740:6: ‘H5Z_ERROR_EDC’ redeclared
warning: h5py/api_types_hdf5.pxd:741:6: ‘H5Z_DISABLE_EDC’ redeclared
warning: h5py/api_types_hdf5.pxd:742:6: ‘H5Z_ENABLE_EDC’ redeclared
warning: h5py/api_types_hdf5.pxd:743:6: ‘H5Z_NO_EDC’ redeclared
[ 6/23] Cythonizing /tmp/pip-build-k0p9t7t3/h5py/h5py/h5.pyx
warning: h5py/api_types_hdf5.pxd:418:2: ‘H5D_layout_t’ redeclared
warning: h5py/api_types_hdf5.pxd:425:2: ‘H5D_alloc_time_t’ redeclared
warning: h5py/api_types_hdf5.pxd:432:2: ‘H5D_space_status_t’ redeclared
warning: h5py/api_types_hdf5.pxd:438:2: ‘H5D_fill_time_t’ redeclared
warning: h5py/api_types_hdf5.pxd:444:2: ‘H5D_fill_value_t’ redeclared
warning: h5py/api_types_hdf5.pxd:456:7: ‘H5F_close_degree_t’ redeclared
warning: h5py/api_types_hdf5.pxd:462:2: ‘H5FD_mem_t’ redeclared
warning: h5py/api_types_hdf5.pxd:560:2: ‘H5T_cset_t’ redeclared
warning: h5py/api_types_hdf5.pxd:739:7: ‘H5Z_EDC_t’ redeclared
warning: h5py/api_types_hdf5.pxd:419:4: ‘H5D_LAYOUT_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:420:4: ‘H5D_COMPACT’ redeclared
warning: h5py/api_types_hdf5.pxd:421:4: ‘H5D_CONTIGUOUS’ redeclared
warning: h5py/api_types_hdf5.pxd:422:4: ‘H5D_CHUNKED’ redeclared
warning: h5py/api_types_hdf5.pxd:423:4: ‘H5D_NLAYOUTS’ redeclared
warning: h5py/api_types_hdf5.pxd:426:4: ‘H5D_ALLOC_TIME_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:427:4: ‘H5D_ALLOC_TIME_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:428:4: ‘H5D_ALLOC_TIME_EARLY’ redeclared
warning: h5py/api_types_hdf5.pxd:429:4: ‘H5D_ALLOC_TIME_LATE’ redeclared
warning: h5py/api_types_hdf5.pxd:430:4: ‘H5D_ALLOC_TIME_INCR’ redeclared
warning: h5py/api_types_hdf5.pxd:433:4: ‘H5D_SPACE_STATUS_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:434:4: ‘H5D_SPACE_STATUS_NOT_ALLOCATED’ redeclared
warning: h5py/api_types_hdf5.pxd:435:4: ‘H5D_SPACE_STATUS_PART_ALLOCATED’ redeclared
warning: h5py/api_types_hdf5.pxd:436:4: ‘H5D_SPACE_STATUS_ALLOCATED’ redeclared
warning: h5py/api_types_hdf5.pxd:439:4: ‘H5D_FILL_TIME_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:440:4: ‘H5D_FILL_TIME_ALLOC’ redeclared
warning: h5py/api_types_hdf5.pxd:441:4: ‘H5D_FILL_TIME_NEVER’ redeclared
warning: h5py/api_types_hdf5.pxd:442:4: ‘H5D_FILL_TIME_IFSET’ redeclared
warning: h5py/api_types_hdf5.pxd:445:4: ‘H5D_FILL_VALUE_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:446:4: ‘H5D_FILL_VALUE_UNDEFINED’ redeclared
warning: h5py/api_types_hdf5.pxd:447:4: ‘H5D_FILL_VALUE_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:448:4: ‘H5D_FILL_VALUE_USER_DEFINED’ redeclared
warning: h5py/api_types_hdf5.pxd:457:4: ‘H5F_CLOSE_WEAK’ redeclared
warning: h5py/api_types_hdf5.pxd:458:4: ‘H5F_CLOSE_SEMI’ redeclared
warning: h5py/api_types_hdf5.pxd:459:4: ‘H5F_CLOSE_STRONG’ redeclared
warning: h5py/api_types_hdf5.pxd:460:4: ‘H5F_CLOSE_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:463:4: ‘H5FD_MEM_NOLIST’ redeclared
warning: h5py/api_types_hdf5.pxd:464:4: ‘H5FD_MEM_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:465:4: ‘H5FD_MEM_SUPER’ redeclared
warning: h5py/api_types_hdf5.pxd:466:4: ‘H5FD_MEM_BTREE’ redeclared
warning: h5py/api_types_hdf5.pxd:467:4: ‘H5FD_MEM_DRAW’ redeclared
warning: h5py/api_types_hdf5.pxd:468:4: ‘H5FD_MEM_GHEAP’ redeclared
warning: h5py/api_types_hdf5.pxd:469:4: ‘H5FD_MEM_LHEAP’ redeclared
warning: h5py/api_types_hdf5.pxd:470:4: ‘H5FD_MEM_OHDR’ redeclared
warning: h5py/api_types_hdf5.pxd:471:4: ‘H5FD_MEM_NTYPES’ redeclared
warning: h5py/api_types_hdf5.pxd:561:4: ‘H5T_CSET_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:562:4: ‘H5T_CSET_ASCII’ redeclared
warning: h5py/api_types_hdf5.pxd:705:2: ‘H5Z_filter_t’ redeclared
warning: h5py/api_types_hdf5.pxd:740:6: ‘H5Z_ERROR_EDC’ redeclared
warning: h5py/api_types_hdf5.pxd:741:6: ‘H5Z_DISABLE_EDC’ redeclared
warning: h5py/api_types_hdf5.pxd:742:6: ‘H5Z_ENABLE_EDC’ redeclared
warning: h5py/api_types_hdf5.pxd:743:6: ‘H5Z_NO_EDC’ redeclared
[ 7/23] Cythonizing /tmp/pip-build-k0p9t7t3/h5py/h5py/h5a.pyx
warning: h5py/api_types_hdf5.pxd:418:2: ‘H5D_layout_t’ redeclared
warning: h5py/api_types_hdf5.pxd:425:2: ‘H5D_alloc_time_t’ redeclared
warning: h5py/api_types_hdf5.pxd:432:2: ‘H5D_space_status_t’ redeclared
warning: h5py/api_types_hdf5.pxd:438:2: ‘H5D_fill_time_t’ redeclared
warning: h5py/api_types_hdf5.pxd:444:2: ‘H5D_fill_value_t’ redeclared
warning: h5py/api_types_hdf5.pxd:456:7: ‘H5F_close_degree_t’ redeclared
warning: h5py/api_types_hdf5.pxd:462:2: ‘H5FD_mem_t’ redeclared
warning: h5py/api_types_hdf5.pxd:560:2: ‘H5T_cset_t’ redeclared
warning: h5py/api_types_hdf5.pxd:739:7: ‘H5Z_EDC_t’ redeclared
warning: h5py/api_types_hdf5.pxd:419:4: ‘H5D_LAYOUT_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:420:4: ‘H5D_COMPACT’ redeclared
warning: h5py/api_types_hdf5.pxd:421:4: ‘H5D_CONTIGUOUS’ redeclared
warning: h5py/api_types_hdf5.pxd:422:4: ‘H5D_CHUNKED’ redeclared
warning: h5py/api_types_hdf5.pxd:423:4: ‘H5D_NLAYOUTS’ redeclared
warning: h5py/api_types_hdf5.pxd:426:4: ‘H5D_ALLOC_TIME_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:427:4: ‘H5D_ALLOC_TIME_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:428:4: ‘H5D_ALLOC_TIME_EARLY’ redeclared
warning: h5py/api_types_hdf5.pxd:429:4: ‘H5D_ALLOC_TIME_LATE’ redeclared
warning: h5py/api_types_hdf5.pxd:430:4: ‘H5D_ALLOC_TIME_INCR’ redeclared
warning: h5py/api_types_hdf5.pxd:433:4: ‘H5D_SPACE_STATUS_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:434:4: ‘H5D_SPACE_STATUS_NOT_ALLOCATED’ redeclared
warning: h5py/api_types_hdf5.pxd:435:4: ‘H5D_SPACE_STATUS_PART_ALLOCATED’ redeclared
warning: h5py/api_types_hdf5.pxd:436:4: ‘H5D_SPACE_STATUS_ALLOCATED’ redeclared
warning: h5py/api_types_hdf5.pxd:439:4: ‘H5D_FILL_TIME_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:440:4: ‘H5D_FILL_TIME_ALLOC’ redeclared
warning: h5py/api_types_hdf5.pxd:441:4: ‘H5D_FILL_TIME_NEVER’ redeclared
warning: h5py/api_types_hdf5.pxd:442:4: ‘H5D_FILL_TIME_IFSET’ redeclared
warning: h5py/api_types_hdf5.pxd:445:4: ‘H5D_FILL_VALUE_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:446:4: ‘H5D_FILL_VALUE_UNDEFINED’ redeclared
warning: h5py/api_types_hdf5.pxd:447:4: ‘H5D_FILL_VALUE_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:448:4: ‘H5D_FILL_VALUE_USER_DEFINED’ redeclared
warning: h5py/api_types_hdf5.pxd:457:4: ‘H5F_CLOSE_WEAK’ redeclared
warning: h5py/api_types_hdf5.pxd:458:4: ‘H5F_CLOSE_SEMI’ redeclared
warning: h5py/api_types_hdf5.pxd:459:4: ‘H5F_CLOSE_STRONG’ redeclared
warning: h5py/api_types_hdf5.pxd:460:4: ‘H5F_CLOSE_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:463:4: ‘H5FD_MEM_NOLIST’ redeclared
warning: h5py/api_types_hdf5.pxd:464:4: ‘H5FD_MEM_DEFAULT’ redeclared
warning: h5py/api_types_hdf5.pxd:465:4: ‘H5FD_MEM_SUPER’ redeclared
warning: h5py/api_types_hdf5.pxd:466:4: ‘H5FD_MEM_BTREE’ redeclared
warning: h5py/api_types_hdf5.pxd:467:4: ‘H5FD_MEM_DRAW’ redeclared
warning: h5py/api_types_hdf5.pxd:468:4: ‘H5FD_MEM_GHEAP’ redeclared
warning: h5py/api_types_hdf5.pxd:469:4: ‘H5FD_MEM_LHEAP’ redeclared
warning: h5py/api_types_hdf5.pxd:470:4: ‘H5FD_MEM_OHDR’ redeclared
warning: h5py/api_types_hdf5.pxd:471:4: ‘H5FD_MEM_NTYPES’ redeclared
warning: h5py/api_types_hdf5.pxd:561:4: ‘H5T_CSET_ERROR’ redeclared
warning: h5py/api_types_hdf5.pxd:562:4: ‘H5T_CSET_ASCII’ redeclared
warning: h5py/api_types_hdf5.pxd:705:2: ‘H5Z_filter_t’ redeclared
warning: h5py/api_types_hdf5.pxd:740:6: ‘H5Z_ERROR_EDC’ redeclared
warning: h5py/api_types_hdf5.pxd:741:6: ‘H5Z_DISABLE_EDC’ redeclared
warning: h5py/api_types_hdf5.pxd:742:6: ‘H5Z_ENABLE_EDC’ redeclared
warning: h5py/api_types_hdf5.pxd:743:6: ‘H5Z_NO_EDC’ redeclared

Error compiling Cython file:

…

— open, open_by_name, open_by_idx —

@with_phil
def open(ObjectID loc not None, char* name=NULL, int index=-1, *,
^

h5py/h5a.pyx:54:32: Cannot convert ‘void *’ to Python object

Error compiling Cython file:

…
“”"
H5Arename_by_name(loc.id, obj_name, name, new_name, pdefault(lapl))

@with_phil
def delete(ObjectID loc not None, char* name=NULL, int index=-1, *,
^

h5py/h5a.pyx:122:34: Cannot convert ‘void *’ to Python object

Error compiling Cython file:

…
def _hash(self):
return hash((self.corder_valid, self.corder, self.cset, self.data_size))

@with_phil
def get_info(ObjectID loc not None, char* name=NULL, int index=-1, *,
^

h5py/h5a.pyx:184:36: Cannot convert ‘void *’ to Python object
Traceback (most recent call last):
File “”, line 1, in
File “/tmp/pip-build-k0p9t7t3/h5py/setup.py”, line 159, in
cmdclass = CMDCLASS,
File “/usr/lib/python3/dist-packages/setuptools/init.py”, line 129, in setup
return distutils.core.setup(**attrs)
File “/usr/lib/python3.6/distutils/core.py”, line 148, in setup
dist.run_commands()
File “/usr/lib/python3.6/distutils/dist.py”, line 955, in run_commands
self.run_command(cmd)
File “/usr/lib/python3.6/distutils/dist.py”, line 974, in run_command
cmd_obj.run()
File “/usr/lib/python3/dist-packages/wheel/bdist_wheel.py”, line 204, in run
self.run_command(‘build’)
File “/usr/lib/python3.6/distutils/cmd.py”, line 313, in run_command
self.distribution.run_command(command)
File “/usr/lib/python3.6/distutils/dist.py”, line 974, in run_command
cmd_obj.run()
File “/usr/lib/python3.6/distutils/command/build.py”, line 135, in run
self.run_command(cmd_name)
File “/usr/lib/python3.6/distutils/cmd.py”, line 313, in run_command
self.distribution.run_command(command)
File “/usr/lib/python3.6/distutils/dist.py”, line 974, in run_command
cmd_obj.run()
File “/tmp/pip-build-k0p9t7t3/h5py/setup_build.py”, line 209, in run
language_level=2)
File “/tmp/pip-build-k0p9t7t3/h5py/.eggs/Cython-3.0a6-py3.6.egg/Cython/Build/Dependencies.py”, line 1110, in cythonize
cythonize_one(*args)
File “/tmp/pip-build-k0p9t7t3/h5py/.eggs/Cython-3.0a6-py3.6.egg/Cython/Build/Dependencies.py”, line 1277, in cythonize_one
raise CompileError(None, pyx_file)
Cython.Compiler.Errors.CompileError: /tmp/pip-build-k0p9t7t3/h5py/h5py/h5a.pyx

Failed building wheel for h5py
Running setup.py clean for h5py
Running setup.py bdist_wheel for scipy … error
Complete output from command /usr/bin/python3 -u -c “import setuptools, tokenize;file=‘/tmp/pip-build-k0p9t7t3/scipy/setup.py’;f=getattr(tokenize, ‘open’, open)(file);code=f.read().replace(‘\r\n’, ‘\n’);f.close();exec(compile(code, file, ‘exec’))” bdist_wheel -d /tmp/tmp6ljprrpjpip-wheel- --python-tag cp36:
/tmp/easy_install-zfcmejng/numpy-1.19.1/setup.py:470: UserWarning: Unrecognized setuptools command, proceeding with generating Cython sources and expanding templates
run_build = parse_setuppy_commands()
Cythonizing sources
Processing numpy/random/_bounded_integers.pxd.in
Processing numpy/random/bit_generator.pyx
Traceback (most recent call last):
File “/tmp/easy_install-zfcmejng/numpy-1.19.1/tools/cythonize.py”, line 59, in process_pyx
from Cython.Compiler.Version import version as cython_version
ModuleNotFoundError: No module named ‘Cython’

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File “/tmp/easy_install-zfcmejng/numpy-1.19.1/tools/cythonize.py”, line 235, in
main()
File “/tmp/easy_install-zfcmejng/numpy-1.19.1/tools/cythonize.py”, line 231, in main
find_process_files(root_dir)
File “/tmp/easy_install-zfcmejng/numpy-1.19.1/tools/cythonize.py”, line 222, in find_process_files
process(root_dir, fromfile, tofile, function, hash_db)
File “/tmp/easy_install-zfcmejng/numpy-1.19.1/tools/cythonize.py”, line 188, in process
processor_function(fromfile, tofile)
File “/tmp/easy_install-zfcmejng/numpy-1.19.1/tools/cythonize.py”, line 64, in process_pyx
raise OSError(‘Cython needs to be installed in Python as a module’)
OSError: Cython needs to be installed in Python as a module
Traceback (most recent call last):
File “/usr/lib/python3/dist-packages/setuptools/sandbox.py”, line 154, in save_modules
yield saved
File “/usr/lib/python3/dist-packages/setuptools/sandbox.py”, line 195, in setup_context
yield
File “/usr/lib/python3/dist-packages/setuptools/sandbox.py”, line 250, in run_setup
_execfile(setup_script, ns)
File “/usr/lib/python3/dist-packages/setuptools/sandbox.py”, line 45, in _execfile
exec(code, globals, locals)
File “/tmp/easy_install-zfcmejng/numpy-1.19.1/setup.py”, line 499, in
cmdclass[‘build_sphinx’] = ScipyBuildDoc
File “/tmp/easy_install-zfcmejng/numpy-1.19.1/setup.py”, line 479, in setup_package
config = Configuration(None, parent_package, top_path)
File “/tmp/easy_install-zfcmejng/numpy-1.19.1/setup.py”, line 274, in generate_cython
cc = sysconfig.get_config_var(“CC”)
RuntimeError: Running cythonize failed!

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File “”, line 1, in
File “/tmp/pip-build-k0p9t7t3/scipy/setup.py”, line 583, in
setup_package()
File “/tmp/pip-build-k0p9t7t3/scipy/setup.py”, line 579, in setup_package
setup(**metadata)
File “/usr/lib/python3/dist-packages/numpy/distutils/core.py”, line 126, in setup
dist = setup(**new_attr)
File “/usr/lib/python3/dist-packages/numpy/distutils/core.py”, line 169, in setup
return old_setup(**new_attr)
File “/usr/lib/python3/dist-packages/setuptools/init.py”, line 128, in setup
_install_setup_requires(attrs)
File “/usr/lib/python3/dist-packages/setuptools/init.py”, line 123, in _install_setup_requires
dist.fetch_build_eggs(dist.setup_requires)
File “/usr/lib/python3/dist-packages/setuptools/dist.py”, line 513, in fetch_build_eggs
replace_conflicting=True,
File “/usr/lib/python3/dist-packages/pkg_resources/init.py”, line 774, in resolve
replace_conflicting=replace_conflicting
File “/usr/lib/python3/dist-packages/pkg_resources/init.py”, line 1057, in best_match
return self.obtain(req, installer)
File “/usr/lib/python3/dist-packages/pkg_resources/init.py”, line 1069, in obtain
return installer(requirement)
File “/usr/lib/python3/dist-packages/setuptools/dist.py”, line 580, in fetch_build_egg
return cmd.easy_install(req)
File “/usr/lib/python3/dist-packages/setuptools/command/easy_install.py”, line 698, in easy_install
return self.install_item(spec, dist.location, tmpdir, deps)
File “/usr/lib/python3/dist-packages/setuptools/command/easy_install.py”, line 724, in install_item
dists = self.install_eggs(spec, download, tmpdir)
File “/usr/lib/python3/dist-packages/setuptools/command/easy_install.py”, line 909, in install_eggs
return self.build_and_install(setup_script, setup_base)
File “/usr/lib/python3/dist-packages/setuptools/command/easy_install.py”, line 1177, in build_and_install
self.run_setup(setup_script, setup_base, args)
File “/usr/lib/python3/dist-packages/setuptools/command/easy_install.py”, line 1163, in run_setup
run_setup(setup_script, args)
File “/usr/lib/python3/dist-packages/setuptools/sandbox.py”, line 253, in run_setup
raise
File “/usr/lib/python3.6/contextlib.py”, line 99, in exit
self.gen.throw(type, value, traceback)
File “/usr/lib/python3/dist-packages/setuptools/sandbox.py”, line 195, in setup_context
yield
File “/usr/lib/python3.6/contextlib.py”, line 99, in exit
self.gen.throw(type, value, traceback)
File “/usr/lib/python3/dist-packages/setuptools/sandbox.py”, line 166, in save_modules
saved_exc.resume()
File “/usr/lib/python3/dist-packages/setuptools/sandbox.py”, line 141, in resume
six.reraise(type, exc, self._tb)
File “/usr/lib/python3/dist-packages/setuptools/_vendor/six.py”, line 685, in reraise
raise value.with_traceback(tb)
File “/usr/lib/python3/dist-packages/setuptools/sandbox.py”, line 154, in save_modules
yield saved
File “/usr/lib/python3/dist-packages/setuptools/sandbox.py”, line 195, in setup_context
yield
File “/usr/lib/python3/dist-packages/setuptools/sandbox.py”, line 250, in run_setup
_execfile(setup_script, ns)
File “/usr/lib/python3/dist-packages/setuptools/sandbox.py”, line 45, in _execfile
exec(code, globals, locals)
File “/tmp/easy_install-zfcmejng/numpy-1.19.1/setup.py”, line 499, in
cmdclass[‘build_sphinx’] = ScipyBuildDoc
File “/tmp/easy_install-zfcmejng/numpy-1.19.1/setup.py”, line 479, in setup_package
config = Configuration(None, parent_package, top_path)
File “/tmp/easy_install-zfcmejng/numpy-1.19.1/setup.py”, line 274, in generate_cython
cc = sysconfig.get_config_var(“CC”)
RuntimeError: Running cythonize failed!

Failed building wheel for scipy
Running setup.py clean for scipy
Complete output from command /usr/bin/python3 -u -c “import setuptools, tokenize;file=‘/tmp/pip-build-k0p9t7t3/scipy/setup.py’;f=getattr(tokenize, ‘open’, open)(file);code=f.read().replace(‘\r\n’, ‘\n’);f.close();exec(compile(code, file, ‘exec’))” clean --all:

setup.py clean is not supported, use one of the following instead:

- `git clean -xdf` (cleans all files)
- `git clean -Xdf` (cleans all versioned files, doesn't touch
                    files that aren't checked into the git repo)

Add --force to your command to use it anyway if you must (unsupported).

Failed cleaning build dir for scipy
Running setup.py bdist_wheel for numpy … error
Complete output from command /usr/bin/python3 -u -c “import setuptools, tokenize;file=‘/tmp/pip-build-k0p9t7t3/numpy/setup.py’;f=getattr(tokenize, ‘open’, open)(file);code=f.read().replace(‘\r\n’, ‘\n’);f.close();exec(compile(code, file, ‘exec’))” bdist_wheel -d /tmp/tmpvipk4ylwpip-wheel- --python-tag cp36:
Running from numpy source directory.
Cythonizing sources
Processing numpy/random/_bounded_integers.pxd.in
Processing numpy/random/bit_generator.pyx
Traceback (most recent call last):
File “/tmp/pip-build-k0p9t7t3/numpy/tools/cythonize.py”, line 59, in process_pyx
from Cython.Compiler.Version import version as cython_version
ModuleNotFoundError: No module named ‘Cython’

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
File “/tmp/pip-build-k0p9t7t3/numpy/tools/cythonize.py”, line 235, in
main()
File “/tmp/pip-build-k0p9t7t3/numpy/tools/cythonize.py”, line 231, in main
find_process_files(root_dir)
File “/tmp/pip-build-k0p9t7t3/numpy/tools/cythonize.py”, line 222, in find_process_files
process(root_dir, fromfile, tofile, function, hash_db)
File “/tmp/pip-build-k0p9t7t3/numpy/tools/cythonize.py”, line 188, in process
processor_function(fromfile, tofile)
File “/tmp/pip-build-k0p9t7t3/numpy/tools/cythonize.py”, line 64, in process_pyx
raise OSError(‘Cython needs to be installed in Python as a module’)
OSError: Cython needs to be installed in Python as a module
Traceback (most recent call last):
File “”, line 1, in
File “/tmp/pip-build-k0p9t7t3/numpy/setup.py”, line 499, in
setup_package()
File “/tmp/pip-build-k0p9t7t3/numpy/setup.py”, line 479, in setup_package
generate_cython()
File “/tmp/pip-build-k0p9t7t3/numpy/setup.py”, line 274, in generate_cython
raise RuntimeError(“Running cythonize failed!”)
RuntimeError: Running cythonize failed!

Failed building wheel for numpy
Running setup.py clean for numpy
Complete output from command /usr/bin/python3 -u -c “import setuptools, tokenize;file=‘/tmp/pip-build-k0p9t7t3/numpy/setup.py’;f=getattr(tokenize, ‘open’, open)(file);code=f.read().replace(‘\r\n’, ‘\n’);f.close();exec(compile(code, file, ‘exec’))” clean --all:
Running from numpy source directory.

setup.py clean is not supported, use one of the following instead:

- `git clean -xdf` (cleans all files)
- `git clean -Xdf` (cleans all versioned files, doesn't touch
                    files that aren't checked into the git repo)

Add --force to your command to use it anyway if you must (unsupported).

Failed cleaning build dir for numpy
Failed to build h5py scipy numpy
Installing collected packages: numpy, six, h5py, pyyaml, scipy, keras
Running setup.py install for numpy … error
Complete output from command /usr/bin/python3 -u -c “import setuptools, tokenize;file=‘/tmp/pip-build-k0p9t7t3/numpy/setup.py’;f=getattr(tokenize, ‘open’, open)(file);code=f.read().replace(‘\r\n’, ‘\n’);f.close();exec(compile(code, file, ‘exec’))” install --record /tmp/pip-jhinxv3h-record/install-record.txt --single-version-externally-managed --compile --user --prefix=:
Running from numpy source directory.

Note: if you need reliable uninstall behavior, then install
with pip instead of using `setup.py install`:

  - `pip install .`       (from a git repo or downloaded source
                           release)
  - `pip install numpy`   (last NumPy release on PyPi)


Cythonizing sources
numpy/random/_bounded_integers.pxd.in has not changed
Processing numpy/random/bit_generator.pyx
Traceback (most recent call last):
  File "/tmp/pip-build-k0p9t7t3/numpy/tools/cythonize.py", line 59, in process_pyx
    from Cython.Compiler.Version import version as cython_version
ModuleNotFoundError: No module named 'Cython'

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/tmp/pip-build-k0p9t7t3/numpy/tools/cythonize.py", line 235, in <module>
    main()
  File "/tmp/pip-build-k0p9t7t3/numpy/tools/cythonize.py", line 231, in main
    find_process_files(root_dir)
  File "/tmp/pip-build-k0p9t7t3/numpy/tools/cythonize.py", line 222, in find_process_files
    process(root_dir, fromfile, tofile, function, hash_db)
  File "/tmp/pip-build-k0p9t7t3/numpy/tools/cythonize.py", line 188, in process
    processor_function(fromfile, tofile)
  File "/tmp/pip-build-k0p9t7t3/numpy/tools/cythonize.py", line 64, in process_pyx
    raise OSError('Cython needs to be installed in Python as a module')
OSError: Cython needs to be installed in Python as a module
Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/tmp/pip-build-k0p9t7t3/numpy/setup.py", line 499, in <module>
    setup_package()
  File "/tmp/pip-build-k0p9t7t3/numpy/setup.py", line 479, in setup_package
    generate_cython()
  File "/tmp/pip-build-k0p9t7t3/numpy/setup.py", line 274, in generate_cython
    raise RuntimeError("Running cythonize failed!")
RuntimeError: Running cythonize failed!

----------------------------------------

Command “/usr/bin/python3 -u -c “import setuptools, tokenize;file=‘/tmp/pip-build-k0p9t7t3/numpy/setup.py’;f=getattr(tokenize, ‘open’, open)(file);code=f.read().replace(‘\r\n’, ‘\n’);f.close();exec(compile(code, file, ‘exec’))” install --record /tmp/pip-jhinxv3h-record/install-record.txt --single-version-externally-managed --compile --user --prefix=” failed with error code 1 in /tmp/pip-build-k0p9t7t3/numpy/

AastaLLL · August 3, 2020, 4:07am

Hi,

Do you follow our tutorial to install TensorFlow and Keras?

We can install TensorFlow without issue with the JetPack4.4 GA base.
Are you missing to upgrade the pip3 first?

$ sudo apt-get install python3-pip
$ sudo pip3 install -U pip

Thanks.

noblehusein6 · August 3, 2020, 6:22am

Yeah, I got it. thanks!

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Unable to download Keras

and on the terminal some of the few other errors that pop up are- Failed building wheel for h5py Failed cleaning build dir for numpy

Error compiling Cython file:

— open, open_by_name, open_by_idx —

@with_phil def open(ObjectID loc not None, char* name=NULL, int index=-1, *, ^

Error compiling Cython file:

@with_phil def delete(ObjectID loc not None, char* name=NULL, int index=-1, *, ^

Error compiling Cython file:

@with_phil def get_info(ObjectID loc not None, char* name=NULL, int index=-1, *, ^

Related topics

and on the terminal some of the few other errors that pop up are-
Failed building wheel for h5py
Failed cleaning build dir for numpy

@with_phil
def open(ObjectID loc not None, char* name=NULL, int index=-1, *,
^

@with_phil
def delete(ObjectID loc not None, char* name=NULL, int index=-1, *,
^

@with_phil
def get_info(ObjectID loc not None, char* name=NULL, int index=-1, *,
^