@asgardian
you may try
sudo apt-get update
sudo apt-get install -y build-essential gfortran libatlas-base-dev
sudo pip3 install numpy cython sklearn
or
1. Dependencies
$ sudo apt-get install liblapack-dev gfortran
$ sudo apt-get install python3-pip
$ sudo pip3 install -U pip
$ sudo pip3 install Cython numpy
2. Scipy
$ wget https://github.com/scipy/scipy/releases/download/v1.3.3/scipy-1.3.3.tar.gz
$ tar -xzvf scipy-1.3.3.tar.gz scipy-1.3.3
$ cd scipy-1.3.3/
$ python3 setup.py install --user
3. Tiff
$ wget https://download.osgeo.org/libtiff/tiff-4.1.0.tar.gz
$ tar -xzvf tiff-4.1.0.tar.gz
$ cd tiff-4.1.0/
$ ./configure
$ make
$ sudo make install
4. Scikit-image
$ sudo apt-get install python3-sklearn
$ sudo apt-get install libaec-dev libblosc-dev libffi-dev libbrotli-dev libboost-all-dev libbz2-dev
$ sudo apt-get install libgif-dev libopenjp2-7-dev liblcms2-dev libjpeg-dev libjxr-dev liblz4-dev liblzma-dev libpng-dev libsnappy-dev libwebp-dev libzopfli-dev libzstd-dev
$ sudo pip3 install imagecodecs
$ sudo pip3 install scikit-image