Issue with GPIO Loopback Test Failed JP6.1 L4T36.4.0 with Orin Nano SOM 4GB Custom Carrier Board

We’ve also configured them Bidirectional as you suggested.
Please refer to the following test results.

// check pinmux
$ sudo su
# busybox devmem 0x02430068
0x00000040
# busybox devmem 0x02430070
0x00000040

// Test 1: Control PQ.05 and Read PQ.06
# gpioinfo|grep -iE "PQ.05|PQ.06"
        line 105:      "PQ.05"       unused  output  active-high
        line 106:      "PQ.06"       unused  output  active-high
# gpioget `gpiofind "PQ.06"`
0
# gpioinfo|grep -iE "PQ.05|PQ.06"
        line 105:      "PQ.05"       unused  output  active-high
        line 106:      "PQ.06"       unused   input  active-high
# gpioset --mode=wait `gpiofind "PQ.05"`=1
(open another terminal)
# gpioget `gpiofind "PQ.06"`
1
(terminate gpioset process in previous terminal)

// Test 2: Control PQ.06 and Read PQ.05
# gpioget `gpiofind "PQ.05"`
1
# gpioget `gpiofind "PQ.06"`
1
# gpioinfo|grep -iE "PQ.05|PQ.06"
        line 105:      "PQ.05"       unused   input  active-high
        line 106:      "PQ.06"       unused   input  active-high
# gpioset --mode=wait `gpiofind "PQ.06"`=0
(open another terminal)
# gpioget `gpiofind "PQ.05"`
0
(terminate gpioset process in previous terminal)
# gpioinfo|grep -iE "PQ.05|PQ.06"
        line 105:      "PQ.05"       unused   input  active-high
        line 106:      "PQ.06"       unused  output  active-high

You would find that gpioget command will configure the direction as Input while gpioset command will configure the direction as Output.