hello, I am trying to install cuda and tensort on jetson nano-devoloper-kit 4.6.1 with the documentation in the link. I get a long error while building h5py. I was successfully completing the installation in these processes I did before. How can I overcome this error?
sudo env H5PY_SETUP_REQUIRES=0 pip3 install -U h5py==3.1.0WARNING: The directory '/home/tom05/.cache/pip' or its parent directory is not owned or is not writable by the current user. The cache has been disabled. Check the permissions and owner of that directory. If executing pip with sudo, you should use sudo's -H flag.
Collecting h5py==3.1.0
Downloading h5py-3.1.0.tar.gz (371 kB)
|████████████████████████████████| 371 kB 754 kB/s
Installing build dependencies ... done
Getting requirements to build wheel ... done
Preparing metadata (pyproject.toml) ... done
Collecting cached-property
Downloading cached_property-1.5.2-py2.py3-none-any.whl (7.6 kB)
Requirement already satisfied: numpy>=1.12 in /usr/local/lib/python3.6/dist-packages (from h5py==3.1.0) (1.19.4)
Building wheels for collected packages: h5py
Building wheel for h5py (pyproject.toml) ... error
ERROR: Command errored out with exit status 1:
command: /usr/bin/python3 /usr/local/lib/python3.6/dist-packages/pip/_vendor/pep517/in_process/_in_process.py build_wheel /tmp/tmp511ukex0
cwd: /tmp/pip-install-a9mihwlc/h5py_652398a5039b485c87d0551a37231fda
Complete output (549 lines):
running bdist_wheel
running build
running build_py
creating build
creating build/lib.linux-aarch64-3.6
creating build/lib.linux-aarch64-3.6/h5py
copying h5py/version.py -> build/lib.linux-aarch64-3.6/h5py
copying h5py/__init__.py -> build/lib.linux-aarch64-3.6/h5py
copying h5py/ipy_completer.py -> build/lib.linux-aarch64-3.6/h5py
copying h5py/h5py_warnings.py -> build/lib.linux-aarch64-3.6/h5py
creating build/lib.linux-aarch64-3.6/h5py/_hl
copying h5py/_hl/__init__.py -> build/lib.linux-aarch64-3.6/h5py/_hl
copying h5py/_hl/base.py -> build/lib.linux-aarch64-3.6/h5py/_hl
copying h5py/_hl/filters.py -> build/lib.linux-aarch64-3.6/h5py/_hl
copying h5py/_hl/group.py -> build/lib.linux-aarch64-3.6/h5py/_hl
copying h5py/_hl/attrs.py -> build/lib.linux-aarch64-3.6/h5py/_hl
copying h5py/_hl/datatype.py -> build/lib.linux-aarch64-3.6/h5py/_hl
copying h5py/_hl/files.py -> build/lib.linux-aarch64-3.6/h5py/_hl
copying h5py/_hl/dataset.py -> build/lib.linux-aarch64-3.6/h5py/_hl
copying h5py/_hl/dims.py -> build/lib.linux-aarch64-3.6/h5py/_hl
copying h5py/_hl/vds.py -> build/lib.linux-aarch64-3.6/h5py/_hl
copying h5py/_hl/compat.py -> build/lib.linux-aarch64-3.6/h5py/_hl
copying h5py/_hl/selections2.py -> build/lib.linux-aarch64-3.6/h5py/_hl
copying h5py/_hl/selections.py -> build/lib.linux-aarch64-3.6/h5py/_hl
creating build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/conftest.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_attribute_create.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_errors.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_file_image.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_attrs.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/__init__.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_h5pl.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_dataset_swmr.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_attrs_data.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/common.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_dims_dimensionproxy.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_h5p.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_big_endian_file.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_datatype.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_filters.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_objects.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_dimension_scales.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_h5f.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_file.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_h5d_direct_chunk.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_h5t.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_group.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_selections.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_slicing.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_dtype.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_completions.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_dataset.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_base.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_h5.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_dataset_getitem.py -> build/lib.linux-aarch64-3.6/h5py/tests
copying h5py/tests/test_file2.py -> build/lib.linux-aarch64-3.6/h5py/tests
creating build/lib.linux-aarch64-3.6/h5py/tests/data_files
copying h5py/tests/data_files/__init__.py -> build/lib.linux-aarch64-3.6/h5py/tests/data_files
creating build/lib.linux-aarch64-3.6/h5py/tests/test_vds
copying h5py/tests/test_vds/__init__.py -> build/lib.linux-aarch64-3.6/h5py/tests/test_vds
copying h5py/tests/test_vds/test_virtual_source.py -> build/lib.linux-aarch64-3.6/h5py/tests/test_vds
copying h5py/tests/test_vds/test_highlevel_vds.py -> build/lib.linux-aarch64-3.6/h5py/tests/test_vds
copying h5py/tests/test_vds/test_lowlevel_vds.py -> build/lib.linux-aarch64-3.6/h5py/tests/test_vds
copying h5py/tests/data_files/vlen_string_dset.h5 -> build/lib.linux-aarch64-3.6/h5py/tests/data_files
copying h5py/tests/data_files/vlen_string_dset_utc.h5 -> build/lib.linux-aarch64-3.6/h5py/tests/data_files
copying h5py/tests/data_files/vlen_string_s390x.h5 -> build/lib.linux-aarch64-3.6/h5py/tests/data_files
running build_ext
warning: h5py/config.pxi:3:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:4:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:5:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:6:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:7:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:8:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:9:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:10:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:15:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:62:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:64:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:66:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:68:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:70:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:72:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:74:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:76:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:78:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:102:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:104:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:106:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:107:4: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:109:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:110:4: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:112:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:176:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:193:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:195:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:217:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:245:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:247:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:249:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:251:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:253:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:255:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:261:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:263:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:265:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:267:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:269:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:271:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:273:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:275:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:309:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:311:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:313:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:315:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:317:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:319:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:321:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:323:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:325:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:359:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/defs.pxd:361:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:3:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:4:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:5:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:6:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:7:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:8:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:9:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:10:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/api_types_hdf5.pxd:48:2: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/api_types_hdf5.pxd:64:2: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/api_types_hdf5.pxd:143:2: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/api_types_hdf5.pxd:148:2: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/api_types_hdf5.pxd:156:2: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/api_types_hdf5.pxd:188:2: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/api_types_hdf5.pxd:315:2: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:3:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:4:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:5:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:6:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:7:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:8:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:9:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:10:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/api_types_ext.pxd:14:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/api_types_ext.pxd:25:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/api_types_ext.pxd:52:4: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:3:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:4:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:5:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:6:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:7:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:8:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:9:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:10:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/_conv.pyx:160:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/_conv.pyx:421:8: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:3:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:4:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:5:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:6:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:7:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:8:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:9:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/config.pxi:10:0: The 'DEF' statement is deprecated and will be removed in a future Cython version. Consider using global variables, constants, and in-place literals instead. See https://github.com/cython/cython/issues/4310
warning: h5py/h5r.pxd:17:0: The 'IF' statement is deprecated and will be removed in a future Cython version. Consider using runtime conditions or C macros instead. See https://github.com/cython/cython/issues/4310
Error compiling Cython file:
------------------------------------------------------------
...
# License: Standard 3-clause BSD; see "license.txt" for full license terms
# and contributor agreement.
from .defs cimport *
from ._objects cimport class ObjectID
^
------------------------------------------------------------
h5py/h5t.pxd:13:23: Expected an identifier
Error compiling Cython file:
------------------------------------------------------------
...
from logging import getLogger
from .h5 import get_config
from .h5r cimport Reference, RegionReference, hobj_ref_t, hdset_reg_ref_t
from .h5t cimport H5PY_OBJ, typewrap, py_create, TypeID, H5PY_PYTHON_OPAQUE_TAG
^
------------------------------------------------------------
h5py/_conv.pyx:21:0: 'h5py/h5t/H5PY_OBJ.pxd' not found
Error compiling Cython file:
------------------------------------------------------------
...
from logging import getLogger
from .h5 import get_config
from .h5r cimport Reference, RegionReference, hobj_ref_t, hdset_reg_ref_t
from .h5t cimport H5PY_OBJ, typewrap, py_create, TypeID, H5PY_PYTHON_OPAQUE_TAG
^
------------------------------------------------------------
h5py/_conv.pyx:21:0: 'h5py/h5t/typewrap.pxd' not found
Error compiling Cython file:
------------------------------------------------------------
...
from logging import getLogger
from .h5 import get_config
from .h5r cimport Reference, RegionReference, hobj_ref_t, hdset_reg_ref_t
from .h5t cimport H5PY_OBJ, typewrap, py_create, TypeID, H5PY_PYTHON_OPAQUE_TAG
^
------------------------------------------------------------
h5py/_conv.pyx:21:0: 'h5py/h5t/py_create.pxd' not found
Error compiling Cython file:
------------------------------------------------------------
...
from logging import getLogger
from .h5 import get_config
from .h5r cimport Reference, RegionReference, hobj_ref_t, hdset_reg_ref_t
from .h5t cimport H5PY_OBJ, typewrap, py_create, TypeID, H5PY_PYTHON_OPAQUE_TAG
^
------------------------------------------------------------
h5py/_conv.pyx:21:0: 'h5py/h5t/TypeID.pxd' not found
Error compiling Cython file:
------------------------------------------------------------
...
from logging import getLogger
from .h5 import get_config
from .h5r cimport Reference, RegionReference, hobj_ref_t, hdset_reg_ref_t
from .h5t cimport H5PY_OBJ, typewrap, py_create, TypeID, H5PY_PYTHON_OPAQUE_TAG
^
------------------------------------------------------------
h5py/_conv.pyx:21:0: 'h5py/h5t/H5PY_PYTHON_OPAQUE_TAG.pxd' not found
Error compiling Cython file:
------------------------------------------------------------
...
void* ptr
cdef int conv_vlen2ndarray(void* ipt,
void* opt,
cnp.dtype elem_dtype,
TypeID intype,
^
------------------------------------------------------------
h5py/_conv.pyx:686:27: 'TypeID' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
cdef int conv_vlen2ndarray(void* ipt,
void* opt,
cnp.dtype elem_dtype,
TypeID intype,
TypeID outtype) except -1:
^
------------------------------------------------------------
h5py/_conv.pyx:687:27: 'TypeID' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
return 0
cdef int conv_ndarray2vlen(void* ipt,
void* opt,
TypeID intype,
^
------------------------------------------------------------
h5py/_conv.pyx:809:27: 'TypeID' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
cdef int conv_ndarray2vlen(void* ipt,
void* opt,
TypeID intype,
TypeID outtype) except -1:
^
------------------------------------------------------------
h5py/_conv.pyx:810:27: 'TypeID' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
:return: error-code
"""
cdef:
int command = cdata[0].command
size_t src_size, dst_size
TypeID supertype
^
------------------------------------------------------------
h5py/_conv.pyx:628:8: 'TypeID' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
"""
cdef:
int command = cdata[0].command
size_t src_size, dst_size
TypeID supertype
TypeID outtype
^
------------------------------------------------------------
h5py/_conv.pyx:629:8: 'TypeID' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
void *bkg_i,
hid_t dxpl) except -1 with gil:
cdef:
int command = cdata[0].command
size_t src_size, dst_size
TypeID supertype
^
------------------------------------------------------------
h5py/_conv.pyx:741:8: 'TypeID' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
hid_t dxpl) except -1 with gil:
cdef:
int command = cdata[0].command
size_t src_size, dst_size
TypeID supertype
TypeID outtype
^
------------------------------------------------------------
h5py/_conv.pyx:742:8: 'TypeID' is not a type identifier
Error compiling Cython file:
------------------------------------------------------------
...
cdef char* ctag = NULL
try:
if H5Tget_class(obj) == H5T_OPAQUE:
ctag = H5Tget_tag(obj)
if ctag != NULL:
if strcmp(ctag, H5PY_PYTHON_OPAQUE_TAG) == 0:
^
------------------------------------------------------------
h5py/_conv.pyx:156:32: 'H5PY_PYTHON_OPAQUE_TAG' is not a constant, variable or function identifier
warning: h5py/_conv.pyx:156:32: Obtaining 'const char *' from externally modifiable global Python value
Error compiling Cython file:
------------------------------------------------------------
...
elif command == H5T_CONV_FREE:
pass
elif command == H5T_CONV_CONV:
# need to pass element dtype to converter
supertype = typewrap(H5Tget_super(src_id))
^
------------------------------------------------------------
h5py/_conv.pyx:644:20: 'typewrap' is not a constant, variable or function identifier
Error compiling Cython file:
------------------------------------------------------------
...
elif command == H5T_CONV_CONV:
# need to pass element dtype to converter
supertype = typewrap(H5Tget_super(src_id))
dt = supertype.dtype
outtype = py_create(dt)
^
------------------------------------------------------------
h5py/_conv.pyx:646:18: 'py_create' is not a constant, variable or function identifier
Error compiling Cython file:
------------------------------------------------------------
...
PyObject *pdata_elem
char* buf = <char*>buf_i
if command == H5T_CONV_INIT:
cdata[0].need_bkg = H5T_BKG_NO
if not H5Tequal(src_id, H5PY_OBJ) or H5Tget_class(dst_id) != H5T_VLEN:
^
------------------------------------------------------------
h5py/_conv.pyx:750:32: 'H5PY_OBJ' is not a constant, variable or function identifier
Error compiling Cython file:
------------------------------------------------------------
...
if command == H5T_CONV_INIT:
cdata[0].need_bkg = H5T_BKG_NO
if not H5Tequal(src_id, H5PY_OBJ) or H5Tget_class(dst_id) != H5T_VLEN:
return -2
supertype = typewrap(H5Tget_super(dst_id))
^
------------------------------------------------------------
h5py/_conv.pyx:752:20: 'typewrap' is not a constant, variable or function identifier
Error compiling Cython file:
------------------------------------------------------------
...
return -2
supertype = typewrap(H5Tget_super(dst_id))
for i in range(nl):
# smells a lot
memcpy(&pdata_elem, pdata+i, sizeof(pdata_elem))
if supertype != py_create((<cnp.ndarray> pdata_elem).dtype, 1):
^
------------------------------------------------------------
h5py/_conv.pyx:756:28: 'py_create' is not a constant, variable or function identifier
Error compiling Cython file:
------------------------------------------------------------
...
if nl == 0:
return 0
# need to pass element dtype to converter
pdata_elem = pdata[0]
supertype = py_create((<cnp.ndarray> pdata_elem).dtype)
^
------------------------------------------------------------
h5py/_conv.pyx:773:20: 'py_create' is not a constant, variable or function identifier
Error compiling Cython file:
------------------------------------------------------------
...
return 0
# need to pass element dtype to converter
pdata_elem = pdata[0]
supertype = py_create((<cnp.ndarray> pdata_elem).dtype)
outtype = typewrap(H5Tget_super(dst_id))
^
------------------------------------------------------------
h5py/_conv.pyx:774:18: 'typewrap' is not a constant, variable or function identifier
Error compiling Cython file:
------------------------------------------------------------
...
enum = H5Tenum_create(H5T_STD_I32LE)
vlentype = H5Tvlen_create(H5T_STD_I32LE)
pyobj = H5PY_OBJ
^
------------------------------------------------------------
h5py/_conv.pyx:883:12: 'H5PY_OBJ' is not a constant, variable or function identifier
Loading library to get version: /usr/lib/aarch64-linux-gnu/hdf5/serial/libhdf5.so
********************************************************************************
Summary of the h5py configuration
HDF5 include dirs: [
'/usr/include/hdf5/serial'
]
HDF5 library dirs: [
'/usr/lib/aarch64-linux-gnu/hdf5/serial'
]
HDF5 Version: (1, 10, 0)
MPI Enabled: False
Rebuild Required: True
********************************************************************************
Executing api_gen rebuild of defs
Executing cythonize()
[ 1/24] Cythonizing /tmp/pip-install-a9mihwlc/h5py_652398a5039b485c87d0551a37231fda/h5py/_conv.pyx
Traceback (most recent call last):
File "/usr/local/lib/python3.6/dist-packages/pip/_vendor/pep517/in_process/_in_process.py", line 363, in <module>
main()
File "/usr/local/lib/python3.6/dist-packages/pip/_vendor/pep517/in_process/_in_process.py", line 345, in main
json_out['return_val'] = hook(**hook_input['kwargs'])
File "/usr/local/lib/python3.6/dist-packages/pip/_vendor/pep517/in_process/_in_process.py", line 262, in build_wheel
metadata_directory)
File "/usr/local/lib/python3.6/dist-packages/setuptools/build_meta.py", line 231, in build_wheel
wheel_directory, config_settings)
File "/usr/local/lib/python3.6/dist-packages/setuptools/build_meta.py", line 215, in _build_with_temp_dir
self.run_setup()
File "/usr/local/lib/python3.6/dist-packages/setuptools/build_meta.py", line 158, in run_setup
exec(compile(code, __file__, 'exec'), locals())
File "setup.py", line 183, in <module>
cmdclass = CMDCLASS,
File "/usr/local/lib/python3.6/dist-packages/setuptools/__init__.py", line 153, in setup
return distutils.core.setup(**attrs)
File "/usr/lib/python3.6/distutils/core.py", line 148, in setup
dist.run_commands()
File "/usr/lib/python3.6/distutils/dist.py", line 955, in run_commands
self.run_command(cmd)
File "/usr/lib/python3.6/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/tmp/pip-build-env-23saeu3u/overlay/lib/python3.6/site-packages/wheel/bdist_wheel.py", line 299, in run
self.run_command('build')
File "/usr/lib/python3.6/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.6/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/usr/lib/python3.6/distutils/command/build.py", line 135, in run
self.run_command(cmd_name)
File "/usr/lib/python3.6/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.6/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/tmp/pip-install-a9mihwlc/h5py_652398a5039b485c87d0551a37231fda/setup_build.py", line 171, in run
language_level=3)
File "/usr/local/lib/python3.6/dist-packages/Cython/Build/Dependencies.py", line 1134, in cythonize
cythonize_one(*args)
File "/usr/local/lib/python3.6/dist-packages/Cython/Build/Dependencies.py", line 1301, in cythonize_one
raise CompileError(None, pyx_file)
Cython.Compiler.Errors.CompileError: /tmp/pip-install-a9mihwlc/h5py_652398a5039b485c87d0551a37231fda/h5py/_conv.pyx
----------------------------------------
ERROR: Failed building wheel for h5py
Failed to build h5py
ERROR: Could not build wheels for h5py, which is required to install pyproject.toml-based projects