Nvc++ & external CUDA-thrust conflicts for -stdpar offload

Accelerated Computing HPC Compilers nvc, nvc++ and nvfortran
1

I think I’ve uncovered a subtle interaction between NVC++ and an external CUDA installation when using -stdpar=gpu offload.

We have a module environment as is typical on many HPC installations. When I purge my environment and load only nvhpc, -stdpar=gpu works as expected.

However, when I have a cuda environment loaded as well, -stdpar=gpu has various runtime issues: sometimes runtime errors with failed to synchronize: cudaErrorIllegalAddress: an illegal memory access was encountered; but perhaps most troubling sometimes no runtime errors detected, just erroneous results in a simple std::sort().

I suspect this is an interaction with the thrust detected in the external cuda installation. Any guidance is appreciated!

-Ben

nvhpc only, correct:

$ wget https://raw.githubusercontent.com/benkirk/paradigms_playground/master/parallel_stl_sort.C
$ module purge && module load nvhpc && module list
Currently Loaded Modules:
  1) ncarenv/22.10 (S)   2) craype/2.7.17 (S)   3) nvhpc/22.7

$ nvc++ -stdpar -o parallel_stl_sort parallel_stl_sort.C && ./parallel_stl_sort 
input: v.size()=500000000; 3499211612 581869302 3890346734 3586334585 545404204 4161255391 3922919429 949333985 2715962298 1323567403 418932835 ...
after sort: v.size()=500000000; 5 15 19 22 31 55 60 61 63 88 95 ...
after unique: v.size()=471992679; 5 15 19 22 31 55 60 61 63 88 95 ...
std::copy() / std::sort() / std::unique() / std::execution::seq: 43.127 sec. 
final: v.size()=471992679; 5 15 19 22 31 55 60 61 63 88 95 ...

input: v.size()=500000000; 3499211612 581869302 3890346734 3586334585 545404204 4161255391 3922919429 949333985 2715962298 1323567403 418932835 ...
after sort: v.size()=500000000; 5 15 19 22 31 55 60 61 63 88 95 ...
after unique: v.size()=471992679; 5 15 19 22 31 55 60 61 63 88 95 ...
std::copy() / std::sort() / std::unique() / std::execution::par: 0.632754 sec. 
final: v.size()=471992679; 5 15 19 22 31 55 60 61 63 88 95 ...

input: v.size()=500000000; 3499211612 581869302 3890346734 3586334585 545404204 4161255391 3922919429 949333985 2715962298 1323567403 418932835 ...
after sort: v.size()=500000000; 5 15 19 22 31 55 60 61 63 88 95 ...
after unique: v.size()=471992679; 5 15 19 22 31 55 60 61 63 88 95 ...
std::copy() / std::sort() / std::unique() / std::execution::par_unseq: 0.073256 sec. 
final: v.size()=471992679; 5 15 19 22 31 55 60 61 63 88 95 ...

** nvhpc+cuda, incorrect:**

$ wget https://raw.githubusercontent.com/benkirk/paradigms_playground/master/parallel_stl_sort.C
$ module purge && module load nvhpc cuda && module list
Currently Loaded Modules:
  1) ncarenv/22.10 (S)   2) craype/2.7.17 (S)   3) nvhpc/22.7   4) cuda/11.4.4

$ nvc++ -stdpar -o parallel_stl_sort parallel_stl_sort.C && ./parallel_stl_sort 
input: v.size()=500000000; 3499211612 581869302 3890346734 3586334585 545404204 4161255391 3922919429 949333985 2715962298 1323567403 418932835 ...
after sort: v.size()=500000000; 5 15 19 22 31 55 60 61 63 88 95 ...
after unique: v.size()=471992679; 5 15 19 22 31 55 60 61 63 88 95 ...
std::copy() / std::sort() / std::unique() / std::execution::seq: 42.8227 sec. 
final: v.size()=471992679; 5 15 19 22 31 55 60 61 63 88 95 ...

input: v.size()=500000000; 3499211612 581869302 3890346734 3586334585 545404204 4161255391 3922919429 949333985 2715962298 1323567403 418932835 ...
after sort: v.size()=500000000; 0 0 0 0 0 0 0 0 0 0 0 ...
after unique: v.size()=59328; 765600696 352808383 3641236997 4016398694 1279020192 465826551 864301009 822663315 3257882672 1989160727 4086747794 ...
==> ERROR: size mismatch from serial algorithm!
std::copy() / std::sort() / std::unique() / std::execution::par: 0.61413 sec. 
final: v.size()=59328; 765600696 352808383 3641236997 4016398694 1279020192 465826551 864301009 822663315 3257882672 1989160727 4086747794 ...

input: v.size()=500000000; 3499211612 581869302 3890346734 3586334585 545404204 4161255391 3922919429 949333985 2715962298 1323567403 418932835 ...
after sort: v.size()=500000000; 0 0 0 0 0 0 0 0 0 0 0 ...
after unique: v.size()=643648; 2435803498 2970823809 3485536073 2755831796 3868881694 2623710790 2458607871 3552076208 607421919 2528345273 2013025721 ...
==> ERROR: size mismatch from serial algorithm!
std::copy() / std::sort() / std::unique() / std::execution::par_unseq: 0.606054 sec. 
final: v.size()=643648; 2435803498 2970823809 3485536073 2755831796 3868881694 2623710790 2458607871 3552076208 607421919 2528345273 2013025721 ...
2

Hi Ben,

You’re most likely correct. I’m assuming the cuda/11.4.4 module is setting the “CUDA_HOME” environment variable in which case nvc++ will be picking up the Thrust from CUDA 11.4. There’s a few incompatibilities there that we fixed in the Thurts we ship that didn’t get picked-up by the main Thrust until later CUDA versions. Hence, this is not expected to work.

Please try unsetting the CUDA_HOME environment variable before compiling.

Note that in the 22.9 release, we no longer use CUDA_HOME, instead we started using NVHPC_CUDA_HOME to allow users to switch to using there own CUDA install. Should help eliminate these types of issues.

-Mat

1 Like
3

Absolutely correct, this resolves the issue!! Thanks a lot, and we’ll look forward to deploying 22.9+

$ echo $CUDA_HOME 
/glade/u/apps/dav/opt/cuda/11.4.0/
$ unset CUDA_HOME 
$ nvc++ -stdpar -o parallel_stl_sort parallel_stl_sort.C && ./parallel_stl_sort 
input: v.size()=500000000; 3499211612 581869302 3890346734 3586334585 545404204 4161255391 3922919429 949333985 2715962298 1323567403 418932835 ...
after sort: v.size()=500000000; 5 15 19 22 31 55 60 61 63 88 95 ...
after unique: v.size()=471992679; 5 15 19 22 31 55 60 61 63 88 95 ...
std::copy() / std::sort() / std::unique() / std::execution::seq: 49.7554 sec. 
final: v.size()=471992679; 5 15 19 22 31 55 60 61 63 88 95 ...

input: v.size()=500000000; 3499211612 581869302 3890346734 3586334585 545404204 4161255391 3922919429 949333985 2715962298 1323567403 418932835 ...
after sort: v.size()=500000000; 5 15 19 22 31 55 60 61 63 88 95 ...
after unique: v.size()=471992679; 5 15 19 22 31 55 60 61 63 88 95 ...
std::copy() / std::sort() / std::unique() / std::execution::par: 0.781871 sec. 
final: v.size()=471992679; 5 15 19 22 31 55 60 61 63 88 95 ...

input: v.size()=500000000; 3499211612 581869302 3890346734 3586334585 545404204 4161255391 3922919429 949333985 2715962298 1323567403 418932835 ...
after sort: v.size()=500000000; 5 15 19 22 31 55 60 61 63 88 95 ...
after unique: v.size()=471992679; 5 15 19 22 31 55 60 61 63 88 95 ...
std::copy() / std::sort() / std::unique() / std::execution::par_unseq: 0.0912849 sec. 
final: v.size()=471992679; 5 15 19 22 31 55 60 61 63 88 95 ...
4

Would it be possible to reference the required Thrust by installation prefix, e.g.

#include </full/path/from/the/install/path.h>

to avoid any environment variable fragility? Just an idea.

-Ben

5

Doubtful. The path is relative based on the installation directory, NVHPC compiler version, and CUDA version. Can’t be hard coded. Plus this was a short term problem as the Thrust we shipped was ahead of the CUDA 11.4 version.

6

This topic was automatically closed 14 days after the last reply. New replies are no longer allowed.