error encounter while building atlas libraries

Accelerated Computing HPC Compilers Legacy PGI Compilers
1

Hi,
while upgrading to recent version of PGI compiler, say 5.2-2, error was encountered when compiling the atlas libraries:

make[7]: *** [zinstall_iamax] Error 255
make[7]: Leaving directory /usr/local/Atlas/pgi/tune/blas/level1/Linux_P4SSE2_2' make[6]: *** [Make_ziamax] Error 2 make[6]: Leaving directory /usr/local/Atlas/pgi/src/blas/level1/Linux_P4SSE2_2’
make[5]: *** [zgen] Error 2
make[5]: Leaving directory /usr/local/Atlas/pgi/src/blas/level1/Linux_P4SSE2_2' make[4]: *** [zlib] Error 2 make[4]: Leaving directory /usr/local/Atlas/pgi/src/blas/level1/Linux_P4SSE2_2’
make[3]: *** [lib.grd] Error 2
make[3]: Leaving directory /usr/local/Atlas/pgi/src/auxil/Linux_P4SSE2_2' make[2]: *** [IStage1] Error 2 make[2]: Leaving directory /usr/local/Atlas/pgi/bin/Linux_P4SSE2_2’
ERROR 396 DURING CACHESIZE SEARCH!!. CHECK INSTALL_LOG/Stage1.log FOR DETAILS.
make[2]: Entering directory /usr/local/Atlas/pgi/bin/Linux_P4SSE2_2' cd ../.. ; make error_report arch=Linux_P4SSE2_2 make[3]: Entering directory /usr/local/Atlas/pgi’
make -f Make.top error_report arch=Linux_P4SSE2_2
make[4]: Entering directory /usr/local/Atlas/pgi' uname -a 2>&1 >> bin/Linux_P4SSE2_2/INSTALL_LOG/ERROR.LOG pgcc -v 2>&1 >> bin/Linux_P4SSE2_2/INSTALL_LOG/ERROR.LOG pgcc-Warning-No files to process pgcc -V 2>&1 >> bin/Linux_P4SSE2_2/INSTALL_LOG/ERROR.LOG pgcc --version 2>&1 >> bin/Linux_P4SSE2_2/INSTALL_LOG/ERROR.LOG pgcc-Warning-Unknown switch: --version pgcc-Warning-No files to process /bin/tar cf error_Linux_P4SSE2_2.tar Make.Linux_P4SSE2_2 bin/Linux_P4SSE2_2/INSTALL_LOG/* mv error_Linux_P4SSE2_2.tar.gz error_Linux_P4SSE2_2.tgz make[4]: Leaving directory /usr/local/Atlas/pgi’
make[3]: Leaving directory /usr/local/Atlas/pgi' make[2]: Leaving directory /usr/local/Atlas/pgi/bin/Linux_P4SSE2_2’
Error report error_.tgz has been created in your top-level ATLAS
directory. Be sure to include this file in any help request.


First, make sure this error is not covered in the ATLAS errata file,
http://math-atlas.sourceforge.net/errata.html
All known errors, and most common mistakes/system problems are documented
in this file, so it will save everyone hassle in the long run if you take
the time to scope it out before sending e-mail to the help list.

If this does not have the solution to your problem, and you can’t figure out
what went wrong, submit a support request to the ATLAS support tracker, as
discussed here:
http://math-atlas.sourceforge.net/faq.html#help

In the above examples, should be replaced with your architecture
string, such as “Linux_PIII” or “FreeBSD_21264”.



while tracing the log file under specific arch (to save space, i only extract one of them):

pgcc -DL2SIZE=524288 -I/usr/local/Atlas/pgi/include -I/usr/local/Atlas/pgi/include/Linux_P4SSE2_2 -I/usr/local/Atlas/pgi/include/contrib -DAdd_ -DStringSunStyle -DATL_OS_Linux -DATL_ARCH_P4 -DATL_SSE2 -DATL_SSE1 -DATL_GAS_x8632 -DATL_NCPU=2 -fast -DSREAL -c siamax.c
PGC-W-0221-Redefinition of symbol fabs (siamax.c: 5)
PGC-W-0205-Argument mismatch for fabs (siamax.c: 16)
PGC-W-0205-Argument mismatch for fabs (siamax.c: 24)
PGC-W-0205-Argument mismatch for fabs (siamax.c: 40)
PGC-W-0205-Argument mismatch for fabs (siamax.c: 40)
PGC-W-0205-Argument mismatch for fabs (siamax.c: 46)
PGC-W-0205-Argument mismatch for fabs (siamax.c: 46)
PGC-W-0205-Argument mismatch for fabs (siamax.c: 61)
PGC-S-0094-Illegal type conversion required (siamax.c: 16)
PGC-S-0094-Illegal type conversion required (siamax.c: 24)
PGC-S-0094-Illegal type conversion required (siamax.c: 40)
PGC-S-0094-Illegal type conversion required (siamax.c: 40)
PGC-S-0094-Illegal type conversion required (siamax.c: 46)
PGC-S-0094-Illegal type conversion required (siamax.c: 46)
PGC-S-0094-Illegal type conversion required (siamax.c: 61)
PGC/x86 Linux/x86 5.2-2: compilation completed with severe errors
make[8]: *** [siamaxtest] Error 2
make[8]: Leaving directory `/usr/local/Atlas/pgi/tune/blas/level1/Linux_P4SSE2_2

extracting numerous failed from log file ([jason@cluster pgi]$ grep FAIL ./bin/Linux_P4SSE2_2/INSTALL_LOG/Stage1.log) :

2 of 3 NRM2 TESTS FAILED!!
1 OVER 777 1 FAILED
2 UNDER 777 1 FAILED
4 OVER 777 -1 FAILED
5 UNDER 777 -1 FAILED
7 OVER 777 2 FAILED
8 UNDER 777 2 FAILED
10 OVER 777 -3 FAILED
11 UNDER 777 -3 FAILED
8 of 12 NRM2 TESTS FAILED!!
12 TESTS FAILED!!!
3 TESTS FAILED!!!
3 TESTS FAILED!!!
7 TESTS FAILED!!!
1 TESTS FAILED!!!
3 TESTS FAILED!!!
12 TESTS FAILED!!!
3 TESTS FAILED!!!
3 TESTS FAILED!!!
7 TESTS FAILED!!!
1 TESTS FAILED!!!
3 TESTS FAILED!!!

and only two of archive was built.
Any idea? thanks in advance.


BR,
J

2

J,

The test errors are because “-fast” on a 32-bit system uses the x87 registers, while ATLAS 3.6.0 assumes the use of SSE registers. To use SSE on a 32-bit system, recomple ATLAS with “-fast -Mscalarsse”. I just tested it on a Dual Xeon and it passed all the sanity tests. I’ll update the ATLAS guide with this.

The compilation issue is an interesting situation. It occurs with two files “iamax_ab23p24_x1.c” and “iamax_abs2p36_x1”.c. When you use the function “fabs”, pgcc uses a built in intrinsic function instead of the math library version. These two files attempt to override this behavior by redefining “fabs” to “fabs”. But since “fabs” is a macro function, when “fabs(*X)” is used in the source, the preprocessor changes this to “fabs” not the expected “fabs(*X)”.

You can fix this by simply replacing:

#define fabs fabs

to

#undef fabs

Hope this helps,
Mat

3

Thanks Matt,
this do solve the problem while compiling the Atlas with -fastsse option and thanks for updating the instruction guide of Atlas. However, as claim the manual, with -Mscalarsse is trying to utilize SSE/SSE2 instructions to perform the operations, as it’s a default option in 64-but mode. I tried to compile several program without -Mscalarsse but keep fastsse along, and no error encountered. Is it code specific issue? or?

Thanks.
J

4

On an AMD64 there is no x87 FPU so SSE must be used. So compiling with or without “-Mscalarsse” makes no difference in 64-bits. However, “-fastsse” is really a composite of our most common SSE optimizations.

“-fastsse” ~= “-O2 -Munroll=c:2 -Mnoframe -Mlre -Mscalarsse -Mvect=sse -Mcache_align -Mflushz”

So when compiling with “-fastsse”, “-Mscalarsse” is used implicitly.

I don’t recommend using “-fastsse” when compiling ATLAS’s C source because the vectorizer can cause several sanity tests to fail. The vectorizer when given the SSE option, attempts to rearrange code to take advantage of the system’s ability to perform two simultaneous 64-bit floating point operations. Unfortunately for some code, especially highly tuned code such as ATLAS, this can lead to different than expected results.

Hope this helped!

  • Mat