Segmentation fault

Hello,
In my code , i must to open a file.txt and use those elements.But when i complied with ‘pgfortran -mp -o freefem freefem.f90’ and with 4 threads, i got always ‘SEGMENTATION FAULT’. when i complied with 1 threads, it worked.
Can you explain why?




program freefem
implicit none
integer, parameter :: nmc = 10000 ! number of trials
real, dimension(nmc) :: mu
real :: mean, stdev, t0, t1
integer :: i,j,ix,jt,kscore


!$omp parallel do
do j=1,nmc
cal premier(51477j,kscore)
mu(j)=kscore
enddo
!$omp end parallel do
mean = sum(mu) / dble(nmc)
print
,mean
end program freefem

subroutine premier(ix,kscore)
implicit none
real,dimension(1:1000000,1:21) :: xt,yt,vt
integer,dimension(21) :: nb
integer::na,nmax,ix,i,jt,kscore
real::aa
kscore=0
na=16807
nmax=2147483647
open(unit=12,file=‘triernouveaubeta1.txt’,status=‘unknown’)
do jt=1,21
read(12,) nb(jt)
enddo
do jt=1,20
do i=nb(jt)+1,nb(jt+1)
read(12,
) xt(i,jt),yt(i,jt),vt(i,jt)
enddo
enddo
close(12)
ix=abs(ix*na)
ix=mod(ix,nmax)
aa=dble(ix)/dble(nmax)
if (aa.lt.0.5) then
kscore=nb(2)
else
kscore=nb(3)
endif
return
end subroutine premier

Hi,

Can you post the contents of the ‘triernouveaubeta1.txt’ here, or send it to us if it is too large to post here? I would like to see if I can reproduce the problem, and determine whether this is a defect on our end.

Thanks in advance.

Best regards,

+chris

The size of triernouveaubeta.txt is 291KB. its contains are
0
473
962
1412
1860
2318
2777
3214
3669
4115
4563
5001
5447
5900
6354
6816
7251
7684
8145
8594
9067
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Hi,

I tried to paste the above contents into a file that the application could read, but I got an error. I suspect the user forum software may have garbled the formatting somehow, perhaps inserting or omitting newlines characters.

Could you send this file in an attachment to trs@pgroup.com? In the message body, please put ‘attention: cparrott’. This will help the file get routed to me here at PGI, so I can give this code a try.

Best regards,

+chris

Hi cparrott,
I sent you the file ‘triernouveaubeta1.txt’ the last week. Did you find what is the problem?
Thank.

Hi,

I have not gotten the file yet, but let me check with the person who monitors the TRS alias. Stay tuned.

Thanks,

+chris

I got the file now. I’m looking into the issue here.

Thanks,

+chris

Hi,

I think I see the problem here.

You are calling the subroutine premier() from inside an OpenMP parallel region. That means the entire subroutine will execute in a parallel context.

The problem is with this line here:

open(unit=12,file='triernouveaubeta1.txt',status='unknown')

Executing this line in a parallel context is causing the crash:

(gdb) run
Starting program: /home/cparrott/UF/4371/freefem
[Thread debugging using libthread_db enabled]
[New Thread 0x2aaaab3c9700 (LWP 65392)]
[New Thread 0x2aaaabbca700 (LWP 65394)]
[New Thread 0x2aaaac3cb700 (LWP 65396)]

Program received signal SIGSEGV, Segmentation fault.
[Switching to Thread 0x2aaaac3cb700 (LWP 65396)]
0x0000000000402980 in premier (ix=386128977, kscore=0) at ./freefem.f90:28
28      open(unit=12,file='triernouveaubeta1.txt',status='unknown')
Missing separate debuginfos, use: debuginfo-install glibc-2.12-1.47.el6.x86_64
(gdb) bt
#0  0x0000000000402980 in premier (ix=386128977, kscore=0) at ./freefem.f90:28
#1  0x000000000040282e in freefem () at ./freefem.f90:11
#2  0x00000000004026f4 in main ()
#3  0x0000003cc721ecdd in __libc_start_main () from /lib64/libc.so.6
#4  0x00000000004025e9 in _start ()

In general, it is not a good idea to perform I/O from within a parallel region in OpenMP, as the I/O calls may not necessarily be thread-safe. (Which appears to be the case here!) You can try serializing the I/O region here with an OMP serial directive.

Warning - using the OpenMP serial directive may cause your code to incur a substantial performance hit. Your code may perform better if you can read all the data in at the beginning of the program, before the parallel section.

Hope this helps,

+chris