H5F.c line 1500 in H5Fcreate(): unable to create file

Accelerated Computing HPC Compilers Legacy PGI Compilers
1

Compilation of hdf5-1.8.11 on debian squeeze with v13.6 completes successfully, but

$ make check

fails with:

Testing with new file format:
FAILED
HDF5-DIAG: Error detected in HDF5 (1.8.11) thread 0:
#000: H5F.c line 1500 in H5Fcreate(): unable to create file
major: File accessibilty
minor: Unable to open file
#001: H5F.c line 1303 in H5F_open(): unable to truncate a file which is already open
major: File accessibilty
minor: Unable to open file

Thanks,

Jim

2

Hi Jim,

I just download and built HDF5 1.8.11 with 13.6 but wasn’t able to recreate the error. What configure/environment options did you use? I just set the compilers but didn’t add anything else. Could there be a problem with your system?

%make check
...
Testing with new file format:
Testing deflate filter
Testing     filters (setup)                                            PASSED
Testing     filters (uninitialized read)                               PASSED
Testing     filters (write)                                            PASSED
Testing     filters (read)                                             PASSED
Testing     filters (modify)                                           PASSED
Testing     filters (re-open)                                          PASSED
Testing     filters (partial I/O)                                      PASSED
...
  • Mat
3

Hi Mat,
It must be a problem with this system (AMD bulldozer) system, as ‘make check’ works on another (AMD, not bulldozer) debian ‘squeeze’ system. Will post more later after looking around some more…

Thanks,

Jim

4

Mat,
Resolved by upgrading to wheezy from squeeze, all is well.

Thanks,

Jim