Hello, I saw a post on your homepage that the results of the HaplotypeCaller of Parabricks are the same as those of GATK4 HaplotypeCaller.
Does this really have 100% matching results?
How did you compare the results? I compared the results of the VCF file for both of Parabricks and GATK4 using Illumina/hap.py, but the results were not the same. I’d like to know how you compared the variant calling results.
I look forward to your answer.