Healthcare   Parabricks


Topic Replies Views Activity
Where can I find Free Compute resources?

For fighting COVID-19, what are some free compute resources that can be used with Parabricks?

5 472 January 14, 2021
How to download Clara Parabricks Pipelines Trial version
trial-license

Here are the instructions to download the trial package when you have been granted access. NGC_PARABRICKS_SETUP_instructions.pdf (7.4 MB)

12 589 January 25, 2021
How to deploy Parabricks using AWS AMI?

Planning to deploy Parabricks on AWS, is there an AMI for ease of deployment?

4 499 May 21, 2020
Cudamapper bam output?
0 59 July 14, 2021
Not enough available memory for these GPUs
gpu
1 207 July 14, 2021
How to generate junctions file for star_fusion
3 94 July 12, 2021
Failed to run pbrun deepvariant
2 130 July 9, 2021
'Namespace' object has no attribute 'gpu_devices'
1 222 July 9, 2021
Does the germline pipeline call through the ApplyBQSR process?
3 105 July 9, 2021
Long read analysis tools
3 87 June 23, 2021
Example run has expired
samples
1 91 June 7, 2021
CNVkit with AWS Parabricks
1 75 May 18, 2021
Pbrun glnexus multiple gvcf?
0 96 April 11, 2021
CudaSafeCall() invalid device symbol error
cuda
0 174 April 7, 2021
Mutectcaller with tumor-normal pair returned only haeder vcf
2 128 March 16, 2021
Mutectcaller Invalid tumor sample name input
0 127 March 3, 2021
Does fastq2bam tool have the ability to remove marked duplicates
1 141 March 3, 2021
BWA alternate-aware alignment with Parabrick
0 145 February 24, 2021
Can this run on an RTX 3090 with the latest drivers? "Invalid Device Symbol" error
9 321 February 18, 2021
Profiling Parabricks germline with nvprof
0 107 February 17, 2021
Fq2bam: Unexpected Issue #1, Return code: 2
4 191 February 17, 2021
Parabricks haplotypecaller options
2 134 February 10, 2021
Does Parabricks Support multi-host Parallelism?
hpc
1 229 February 8, 2021
Error for germline pipeline on AWS instance
1 136 February 4, 2021
Pbrun dbsnp return -1
1 152 February 2, 2021
CNVKit not found in Parabrick
2 156 January 29, 2021
Panel of Normal in Parabrick Mutect2 Caller
2 208 January 29, 2021
Fq2bam rel3-nanopore-wgs-288418386-FAB39088.fastq.gz
2 166 January 28, 2021
Parabricks GPU request
2 152 January 27, 2021
About the Parabricks category
5 306 February 10, 2021