Healthcare   Clara Parabricks


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Where can I find Free Compute resources?

For fighting COVID-19, what are some free compute resources that can be used with Parabricks?

5 964 January 14, 2021
How to deploy Parabricks using AWS AMI?

Planning to deploy Parabricks on AWS, is there an AMI for ease of deployment?

4 1064 May 21, 2020
Bamsort Failed with "AttributeError"
4 315 August 5, 2022
Cannot delete a license server
1 150 August 4, 2022
[Flexera LS] HTTP response code said error (503)
5 196 August 1, 2022
PARABRICKS mem from pbrun germline command hanging and not finishing
7 404 July 5, 2022
PB3.8 installation error: "/dssg doesn't exist in the container"
4 278 July 1, 2022
Where to find the version of tools used in the pipelines for the VCF files?
1 691 May 31, 2022
[v3.8][A100][germline] got stuck in the BWA program
0 517 May 27, 2022
Error in Merging Variant Callsets from Multiple Callers into one VCF File
4 534 June 10, 2022
Warning: across different models of device
3 505 May 26, 2022
Parabrick 3.7 Quality Control
1 494 May 26, 2022
Unauthorized: authentication required
8 723 May 17, 2022
[Parabricks3.7][A100] cudaSafeCall() failed at ParaBricks/src/mem_chain_kernel.cu/136: invalid device symbol
3 504 May 20, 2022
[troubleshooting] Download Example FASTQ Files
2 624 April 22, 2022
Planning to set up the Parabricks environment
9 684 May 5, 2022
[troubleshooting] somatic pipeline
0 518 April 20, 2022
Merging BAM files from different fq2bam runs
2 591 April 16, 2022
Parabricks Clara on A16 GPU
cuda
0 554 March 30, 2022
Input for starfusion
0 488 March 30, 2022
Could not run fq2bam as part of germline pipeline
9 878 April 8, 2022
Minor error found on sample script
2 573 April 7, 2022
Error accessing S3 bucket with Parabricks
aws
2 610 March 16, 2022
VQSR (applyVQSR) not doing any filtering
4 677 March 10, 2022
Run parabricks docker container with workflow language (snakemake/nextflow)
0 727 February 16, 2022
Parabricks on 3 GPUs?
2 748 February 15, 2022
Parabrick rna_fq2bam are running for several hours
0 692 February 3, 2022
Received signal: 11 while running fq2bam on the sample dataset
1 669 January 24, 2022
Can I use quantMode?
1 654 January 18, 2022
Run parabricks and found cudaMemGetInfo returned 802
7 981 January 13, 2022