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Feature request: --static-quantized-quals for applybqsr
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1
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37
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October 7, 2026
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Fq2bam postsort/BQSR hangs and crashes on large WGS tumor samples — reproducible across Parabricks 4.6 and 4.7, two different GPU setups
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3
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143
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July 1, 2026
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Ready2Run Parabricks DeepVariant on HealthOmics: silent 0-byte VCF from TensorRT engine version mismatch
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0
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82
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June 20, 2026
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Parabricks fq2bam CRAM output fails samtools index with CRAM slice offset does not match landmark
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2
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101
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June 3, 2026
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Standalone BQSR crashing but full FQ2BAM succeeding
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1
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87
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May 1, 2026
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Memory leak crashing run at MarkDuplicates/BQSR stage in Fq2Bam
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17
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396
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April 26, 2026
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Can Parabricks generate CSI index when running fq2bam?
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2
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110
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April 22, 2026
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Deepvariant_germline --keep-duplicates
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2
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109
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April 13, 2026
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Fq2bam stalls in single-end recovery mode
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3
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165
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March 9, 2026
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Why was it that I was able to successfully run fq2bam but it didn't work properly?
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0
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46
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March 9, 2026
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Options for fq2bam/markdup to only handle optical duplicates and support multi-lane samples
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1
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78
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February 20, 2026
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Memory issues while running Marking Duplicates and BQSR
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3
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213
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January 16, 2026
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NVIDIA Parabricks fq2bam performance
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1
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138
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December 17, 2025
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Fq2bam sometimes gives an error
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1
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223
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September 18, 2025
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GPUS+SLURM+NVIDIA/Parabricks : sometimes I get "cudaGetDevice() failed in geting device ID. Status: unknown error, exiting"
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0
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112
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September 10, 2025
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4.5.0-1 : Haplotype Caller : Number of GPUs requested (2) is more than number of GPUs (0) in the system., exitin
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1
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151
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September 8, 2025
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Getting into recovery mode while using pbrun fq2bam
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0
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119
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June 30, 2025
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"Could not run fq2bam" Is the only verbose output from Parabricks 4.4.0-1 and 4.3.2-1 on tutorial data
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15
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618
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March 3, 2025
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Help with performance from Parabricks on SLURM HPC cluster using Snakemake
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0
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185
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February 7, 2025
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Pbbwa hangs and don't writes bam, but the memory is occupied
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0
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141
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January 30, 2025
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Encountering Bugs/Errors with Germline pipeline - Seeking Help!
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5
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239
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January 17, 2025
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Request for Error-Skipping Option in fq2bam When Handling Fastq Format Issues
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2
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123
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January 15, 2025
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Fq2bam on GCP
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10
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310
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December 11, 2024
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Single-ended recovery mode
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3
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283
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December 9, 2024
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Could not run fq2bam as part of germline pipeline (Version 4.0.1-1 )
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11
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410
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December 9, 2024
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Fq2bamfast index files
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1
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208
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December 6, 2024
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Can't use fq2bam (V4.4.0) with terminate called after throwing an instance of 'std::system_error'
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1
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179
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December 4, 2024
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Parabrick 4.3.1 fq2bam meth takes up too much memory
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3
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235
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November 25, 2024
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No sample names in bam header when using rna_fq2bam
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1
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126
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October 23, 2024
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Fq2bamfast paired file error vs fq2bam Version 4.3.1-1
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3
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219
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September 17, 2024
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