|
Plans for rna_fq2bam: newer STAR version, chimeric/overlap parameters, and --outSAMtype None
|
|
2
|
59
|
October 27, 2026
|
|
Feature request: --static-quantized-quals for applybqsr
|
|
1
|
72
|
October 7, 2026
|
|
Fq2bam postsort/BQSR hangs and crashes on large WGS tumor samples — reproducible across Parabricks 4.6 and 4.7, two different GPU setups
|
|
3
|
195
|
July 1, 2026
|
|
Ready2Run Parabricks DeepVariant on HealthOmics: silent 0-byte VCF from TensorRT engine version mismatch
|
|
0
|
132
|
June 20, 2026
|
|
Parabricks fq2bam CRAM output fails samtools index with CRAM slice offset does not match landmark
|
|
2
|
150
|
June 3, 2026
|
|
Standalone BQSR crashing but full FQ2BAM succeeding
|
|
1
|
115
|
May 1, 2026
|
|
Memory leak crashing run at MarkDuplicates/BQSR stage in Fq2Bam
|
|
17
|
498
|
April 26, 2026
|
|
Can Parabricks generate CSI index when running fq2bam?
|
|
2
|
161
|
April 22, 2026
|
|
Deepvariant_germline --keep-duplicates
|
|
2
|
143
|
April 13, 2026
|
|
Fq2bam stalls in single-end recovery mode
|
|
3
|
211
|
March 9, 2026
|
|
Why was it that I was able to successfully run fq2bam but it didn't work properly?
|
|
0
|
52
|
March 9, 2026
|
|
Options for fq2bam/markdup to only handle optical duplicates and support multi-lane samples
|
|
1
|
99
|
February 20, 2026
|
|
Memory issues while running Marking Duplicates and BQSR
|
|
3
|
242
|
January 16, 2026
|
|
NVIDIA Parabricks fq2bam performance
|
|
1
|
154
|
December 17, 2025
|
|
Fq2bam sometimes gives an error
|
|
1
|
251
|
September 18, 2025
|
|
GPUS+SLURM+NVIDIA/Parabricks : sometimes I get "cudaGetDevice() failed in geting device ID. Status: unknown error, exiting"
|
|
0
|
145
|
September 10, 2025
|
|
4.5.0-1 : Haplotype Caller : Number of GPUs requested (2) is more than number of GPUs (0) in the system., exitin
|
|
1
|
185
|
September 8, 2025
|
|
Getting into recovery mode while using pbrun fq2bam
|
|
0
|
142
|
June 30, 2025
|
|
"Could not run fq2bam" Is the only verbose output from Parabricks 4.4.0-1 and 4.3.2-1 on tutorial data
|
|
15
|
673
|
March 3, 2025
|
|
Help with performance from Parabricks on SLURM HPC cluster using Snakemake
|
|
0
|
247
|
February 7, 2025
|
|
Pbbwa hangs and don't writes bam, but the memory is occupied
|
|
0
|
155
|
January 30, 2025
|
|
Encountering Bugs/Errors with Germline pipeline - Seeking Help!
|
|
5
|
277
|
January 17, 2025
|
|
Request for Error-Skipping Option in fq2bam When Handling Fastq Format Issues
|
|
2
|
145
|
January 15, 2025
|
|
Fq2bam on GCP
|
|
10
|
378
|
December 11, 2024
|
|
Single-ended recovery mode
|
|
3
|
321
|
December 9, 2024
|
|
Could not run fq2bam as part of germline pipeline (Version 4.0.1-1 )
|
|
11
|
427
|
December 9, 2024
|
|
Fq2bamfast index files
|
|
1
|
229
|
December 6, 2024
|
|
Can't use fq2bam (V4.4.0) with terminate called after throwing an instance of 'std::system_error'
|
|
1
|
193
|
December 4, 2024
|
|
Parabrick 4.3.1 fq2bam meth takes up too much memory
|
|
3
|
259
|
November 25, 2024
|
|
No sample names in bam header when using rna_fq2bam
|
|
1
|
141
|
October 23, 2024
|