Don’t really know which part is the real problem here since it seems like there is different problems … But all linked to protobuf at a first sight I would say ? Sorry for the long error list
Building wheels for collected packages: onnx
Building wheel for onnx (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-9tzfjt08/onnx/setup.py'"'"'; __file__='"'"'/tmp/pip-install-9tzfjt08/onnx/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-20oatpbw
cwd: /tmp/pip-install-9tzfjt08/onnx/
Complete output (180 lines):
fatal: not a git repository (or any of the parent directories): .git
running bdist_wheel
running build
running build_py
running create_version
running cmake_build
-- The C compiler identification is GNU 7.4.0
-- The CXX compiler identification is GNU 7.4.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
CMake Warning at /usr/share/cmake-3.10/Modules/FindProtobuf.cmake:455 (message):
Protobuf compiler version 3.8.0 doesn't match library version 3.0.0
Call Stack (most recent call first):
CMakeLists.txt:127 (find_package)
-- Found Protobuf: /usr/lib/aarch64-linux-gnu/libprotobuf.so;-lpthread (found version "3.0.0")
Generated: /tmp/pip-install-9tzfjt08/onnx/.setuptools-cmake-build/onnx/onnx-ml.proto
Generated: /tmp/pip-install-9tzfjt08/onnx/.setuptools-cmake-build/onnx/onnx-operators-ml.proto
CMake Warning at CMakeLists.txt:394 (find_package):
By not providing "Findpybind11.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "pybind11",
but CMake did not find one.
Could not find a package configuration file provided by "pybind11"
(requested version 2.2) with any of the following names:
pybind11Config.cmake
pybind11-config.cmake
Add the installation prefix of "pybind11" to CMAKE_PREFIX_PATH or set
"pybind11_DIR" to a directory containing one of the above files. If
"pybind11" provides a separate development package or SDK, be sure it has
been installed.
--
-- ******** Summary ********
-- CMake version : 3.10.2
-- CMake command : /usr/bin/cmake
-- System : Linux
-- C++ compiler : /usr/bin/c++
-- C++ compiler version : 7.4.0
-- CXX flags : -Wnon-virtual-dtor
-- Build type : Release
-- Compile definitions :
-- CMAKE_PREFIX_PATH :
-- CMAKE_INSTALL_PREFIX : /usr/local
-- CMAKE_MODULE_PATH :
--
-- ONNX version : 1.6.0
-- ONNX NAMESPACE : onnx
-- ONNX_BUILD_TESTS : OFF
-- ONNX_BUILD_BENCHMARKS : OFF
-- ONNX_USE_LITE_PROTO : OFF
-- ONNXIFI_DUMMY_BACKEND : OFF
-- ONNXIFI_ENABLE_EXT : OFF
--
-- Protobuf compiler : /usr/local/bin/protoc
-- Protobuf includes : /usr/include
-- Protobuf libraries : /usr/lib/aarch64-linux-gnu/libprotobuf.so;-lpthread
-- BUILD_ONNX_PYTHON : ON
-- Python version :
-- Python executable : /usr/bin/python3
-- Python includes : /usr/include/python3.6m
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/pip-install-9tzfjt08/onnx/.setuptools-cmake-build
Scanning dependencies of target gen_onnx_proto
Scanning dependencies of target onnxifi_dummy
Scanning dependencies of target onnxifi_loader
[ 1%] Running gen_proto.py on onnx/onnx.in.proto
[ 3%] Building C object CMakeFiles/onnxifi_dummy.dir/onnx/onnxifi_dummy.c.o
[ 4%] Building C object CMakeFiles/onnxifi_loader.dir/onnx/onnxifi_loader.c.o
/tmp/pip-install-9tzfjt08/onnx/onnx/onnxifi_dummy.c: In function ‘onnxGetExtensionFunctionAddress’:
/tmp/pip-install-9tzfjt08/onnx/onnx/onnxifi_dummy.c:173:21: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types]
*function = &onnxGetExtensionFunctionAddress;
^
/tmp/pip-install-9tzfjt08/onnx/onnx/onnxifi_dummy.c:176:21: warning: assignment from incompatible pointer type [-Wincompatible-pointer-types]
*function = &onnxSetIOAndRunGraph;
^
Processing /tmp/pip-install-9tzfjt08/onnx/onnx/onnx.in.proto
Writing /tmp/pip-install-9tzfjt08/onnx/.setuptools-cmake-build/onnx/onnx-ml.proto
Writing /tmp/pip-install-9tzfjt08/onnx/.setuptools-cmake-build/onnx/onnx-ml.proto3
generating /tmp/pip-install-9tzfjt08/onnx/.setuptools-cmake-build/onnx/onnx_pb.py
[ 6%] Linking C static library libonnxifi_loader.a
[ 8%] Running C++ protocol buffer compiler on /tmp/pip-install-9tzfjt08/onnx/.setuptools-cmake-build/onnx/onnx-ml.proto
[ 9%] Linking C shared library libonnxifi_dummy.so
[ 9%] Built target onnxifi_loader
Scanning dependencies of target onnxifi_wrapper
[ 11%] Building C object CMakeFiles/onnxifi_wrapper.dir/onnx/onnxifi_wrapper.c.o
[ 11%] Built target onnxifi_dummy
Failed to generate mypy stubs: No module named google.protobuf.descriptor_pb2
[ 11%] Built target gen_onnx_proto
[ 13%] Running gen_proto.py on onnx/onnx-operators.in.proto
Processing /tmp/pip-install-9tzfjt08/onnx/onnx/onnx-operators.in.proto
Writing /tmp/pip-install-9tzfjt08/onnx/.setuptools-cmake-build/onnx/onnx-operators-ml.proto
Writing /tmp/pip-install-9tzfjt08/onnx/.setuptools-cmake-build/onnx/onnx-operators-ml.proto3
generating /tmp/pip-install-9tzfjt08/onnx/.setuptools-cmake-build/onnx/onnx_operators_pb.py
[ 14%] Running C++ protocol buffer compiler on /tmp/pip-install-9tzfjt08/onnx/.setuptools-cmake-build/onnx/onnx-operators-ml.proto
Failed to generate mypy stubs: No module named google.protobuf.descriptor_pb2
Scanning dependencies of target onnx_proto
[ 18%] Building CXX object CMakeFiles/onnx_proto.dir/onnx/onnx-operators-ml.pb.cc.o
[ 18%] Building CXX object CMakeFiles/onnx_proto.dir/onnx/onnx-ml.pb.cc.o
[ 19%] Linking C shared module libonnxifi.so
In file included from /tmp/pip-install-9tzfjt08/onnx/.setuptools-cmake-build/onnx/onnx-operators-ml.pb.cc:4:0:
/tmp/pip-install-9tzfjt08/onnx/.setuptools-cmake-build/onnx/onnx-operators-ml.pb.h:10:10: fatal error: google/protobuf/port_def.inc: No such file or directory
#include <google/protobuf/port_def.inc>
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
In file included from /tmp/pip-install-9tzfjt08/onnx/.setuptools-cmake-build/onnx/onnx-ml.pb.cc:4:0:
/tmp/pip-install-9tzfjt08/onnx/.setuptools-cmake-build/onnx/onnx-ml.pb.h:10:10: fatal error: google/protobuf/port_def.inc: No such file or directory
#include <google/protobuf/port_def.inc>
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
CMakeFiles/onnx_proto.dir/build.make:108: recipe for target 'CMakeFiles/onnx_proto.dir/onnx/onnx-operators-ml.pb.cc.o' failed
make[2]: *** [CMakeFiles/onnx_proto.dir/onnx/onnx-operators-ml.pb.cc.o] Error 1
make[2]: *** Waiting for unfinished jobs....
CMakeFiles/onnx_proto.dir/build.make:84: recipe for target 'CMakeFiles/onnx_proto.dir/onnx/onnx-ml.pb.cc.o' failed
make[2]: *** [CMakeFiles/onnx_proto.dir/onnx/onnx-ml.pb.cc.o] Error 1
CMakeFiles/Makefile2:242: recipe for target 'CMakeFiles/onnx_proto.dir/all' failed
make[1]: *** [CMakeFiles/onnx_proto.dir/all] Error 2
make[1]: *** Waiting for unfinished jobs....
[ 19%] Built target onnxifi_wrapper
Makefile:129: recipe for target 'all' failed
make: *** [all] Error 2
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-install-9tzfjt08/onnx/setup.py", line 334, in <module>
'backend-test-tools = onnx.backend.test.cmd_tools:main',
File "/usr/local/lib/python3.6/dist-packages/setuptools/__init__.py", line 144, in setup
return distutils.core.setup(**attrs)
File "/usr/lib/python3.6/distutils/core.py", line 148, in setup
dist.run_commands()
File "/usr/lib/python3.6/distutils/dist.py", line 955, in run_commands
self.run_command(cmd)
File "/usr/lib/python3.6/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/usr/lib/python3/dist-packages/wheel/bdist_wheel.py", line 204, in run
self.run_command('build')
File "/usr/lib/python3.6/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.6/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/usr/lib/python3.6/distutils/command/build.py", line 135, in run
self.run_command(cmd_name)
File "/usr/lib/python3.6/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.6/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/tmp/pip-install-9tzfjt08/onnx/setup.py", line 209, in run
self.run_command('cmake_build')
File "/usr/lib/python3.6/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.6/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/tmp/pip-install-9tzfjt08/onnx/setup.py", line 203, in run
subprocess.check_call(build_args)
File "/usr/lib/python3.6/subprocess.py", line 311, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['/usr/bin/cmake', '--build', '.', '--', '-j', '8']' returned non-zero exit status 2.
----------------------------------------
ERROR: Failed building wheel for onnx
Running setup.py clean for onnx
Failed to build onnx
Installing collected packages: onnx
Running setup.py install for onnx ... error
ERROR: Command errored out with exit status 1:
command: /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-install-9tzfjt08/onnx/setup.py'"'"'; __file__='"'"'/tmp/pip-install-9tzfjt08/onnx/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-2plkpoyb/install-record.txt --single-version-externally-managed --user --prefix= --compile --install-headers /home/user/.local/include/python3.6m/onnx
cwd: /tmp/pip-install-9tzfjt08/onnx/
Complete output (125 lines):
fatal: not a git repository (or any of the parent directories): .git
running install
running build
running build_py
running create_version
running cmake_build
CMake Warning at /usr/share/cmake-3.10/Modules/FindProtobuf.cmake:455 (message):
Protobuf compiler version 3.8.0 doesn't match library version 3.0.0
Call Stack (most recent call first):
CMakeLists.txt:127 (find_package)
Generated: /tmp/pip-install-9tzfjt08/onnx/.setuptools-cmake-build/onnx/onnx-ml.proto
Generated: /tmp/pip-install-9tzfjt08/onnx/.setuptools-cmake-build/onnx/onnx-operators-ml.proto
CMake Warning at CMakeLists.txt:394 (find_package):
By not providing "Findpybind11.cmake" in CMAKE_MODULE_PATH this project has
asked CMake to find a package configuration file provided by "pybind11",
but CMake did not find one.
Could not find a package configuration file provided by "pybind11"
(requested version 2.2) with any of the following names:
pybind11Config.cmake
pybind11-config.cmake
Add the installation prefix of "pybind11" to CMAKE_PREFIX_PATH or set
"pybind11_DIR" to a directory containing one of the above files. If
"pybind11" provides a separate development package or SDK, be sure it has
been installed.
--
-- ******** Summary ********
-- CMake version : 3.10.2
-- CMake command : /usr/bin/cmake
-- System : Linux
-- C++ compiler : /usr/bin/c++
-- C++ compiler version : 7.4.0
-- CXX flags : -Wnon-virtual-dtor
-- Build type : Release
-- Compile definitions :
-- CMAKE_PREFIX_PATH :
-- CMAKE_INSTALL_PREFIX : /usr/local
-- CMAKE_MODULE_PATH :
--
-- ONNX version : 1.6.0
-- ONNX NAMESPACE : onnx
-- ONNX_BUILD_TESTS : OFF
-- ONNX_BUILD_BENCHMARKS : OFF
-- ONNX_USE_LITE_PROTO : OFF
-- ONNXIFI_DUMMY_BACKEND : OFF
-- ONNXIFI_ENABLE_EXT : OFF
--
-- Protobuf compiler : /usr/local/bin/protoc
-- Protobuf includes : /usr/include
-- Protobuf libraries : /usr/lib/aarch64-linux-gnu/libprotobuf.so;-lpthread
-- BUILD_ONNX_PYTHON : ON
-- Python version :
-- Python executable : /usr/bin/python3
-- Python includes : /usr/include/python3.6m
-- Configuring done
-- Generating done
-- Build files have been written to: /tmp/pip-install-9tzfjt08/onnx/.setuptools-cmake-build
[ 9%] Built target onnxifi_loader
[ 9%] Built target onnxifi_dummy
[ 9%] Built target gen_onnx_proto
[ 14%] Building CXX object CMakeFiles/onnx_proto.dir/onnx/onnx-ml.pb.cc.o
[ 14%] Building CXX object CMakeFiles/onnx_proto.dir/onnx/onnx-operators-ml.pb.cc.o
[ 16%] Built target onnxifi_wrapper
In file included from /tmp/pip-install-9tzfjt08/onnx/.setuptools-cmake-build/onnx/onnx-ml.pb.cc:4:0:
/tmp/pip-install-9tzfjt08/onnx/.setuptools-cmake-build/onnx/onnx-ml.pb.h:10:10: fatal error: google/protobuf/port_def.inc: No such file or directory
#include <google/protobuf/port_def.inc>
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
In file included from /tmp/pip-install-9tzfjt08/onnx/.setuptools-cmake-build/onnx/onnx-operators-ml.pb.cc:4:0:
/tmp/pip-install-9tzfjt08/onnx/.setuptools-cmake-build/onnx/onnx-operators-ml.pb.h:10:10: fatal error: google/protobuf/port_def.inc: No such file or directory
#include <google/protobuf/port_def.inc>
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
compilation terminated.
CMakeFiles/onnx_proto.dir/build.make:84: recipe for target 'CMakeFiles/onnx_proto.dir/onnx/onnx-ml.pb.cc.o' failed
make[2]: *** [CMakeFiles/onnx_proto.dir/onnx/onnx-ml.pb.cc.o] Error 1
make[2]: *** Waiting for unfinished jobs....
CMakeFiles/onnx_proto.dir/build.make:108: recipe for target 'CMakeFiles/onnx_proto.dir/onnx/onnx-operators-ml.pb.cc.o' failed
make[2]: *** [CMakeFiles/onnx_proto.dir/onnx/onnx-operators-ml.pb.cc.o] Error 1
CMakeFiles/Makefile2:242: recipe for target 'CMakeFiles/onnx_proto.dir/all' failed
make[1]: *** [CMakeFiles/onnx_proto.dir/all] Error 2
Makefile:129: recipe for target 'all' failed
make: *** [all] Error 2
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-install-9tzfjt08/onnx/setup.py", line 334, in <module>
'backend-test-tools = onnx.backend.test.cmd_tools:main',
File "/usr/local/lib/python3.6/dist-packages/setuptools/__init__.py", line 144, in setup
return distutils.core.setup(**attrs)
File "/usr/lib/python3.6/distutils/core.py", line 148, in setup
dist.run_commands()
File "/usr/lib/python3.6/distutils/dist.py", line 955, in run_commands
self.run_command(cmd)
File "/usr/lib/python3.6/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/usr/local/lib/python3.6/dist-packages/setuptools/command/install.py", line 61, in run
return orig.install.run(self)
File "/usr/lib/python3.6/distutils/command/install.py", line 589, in run
self.run_command('build')
File "/usr/lib/python3.6/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.6/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/usr/lib/python3.6/distutils/command/build.py", line 135, in run
self.run_command(cmd_name)
File "/usr/lib/python3.6/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.6/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/tmp/pip-install-9tzfjt08/onnx/setup.py", line 209, in run
self.run_command('cmake_build')
File "/usr/lib/python3.6/distutils/cmd.py", line 313, in run_command
self.distribution.run_command(command)
File "/usr/lib/python3.6/distutils/dist.py", line 974, in run_command
cmd_obj.run()
File "/tmp/pip-install-9tzfjt08/onnx/setup.py", line 203, in run
subprocess.check_call(build_args)
File "/usr/lib/python3.6/subprocess.py", line 311, in check_call
raise CalledProcessError(retcode, cmd)
subprocess.CalledProcessError: Command '['/usr/bin/cmake', '--build', '.', '--', '-j', '8']' returned non-zero exit status 2.