Could you apply the patch from the following thread to check if it could help for your case?
40hdr - SPI1 gpio padctl register bit[10] effect by gpiod tools in JP6 - #20 by KevinFFF
Could you apply the patch from the following thread to check if it could help for your case?
40hdr - SPI1 gpio padctl register bit[10] effect by gpiod tools in JP6 - #20 by KevinFFF