parabricks 4.0.1, parabricsk haplotypecaller can’t generate gvcf.gz, but only gvcf, also the genotypegvcf .
Related topics
| Topic | Replies | Views | Activity | |
|---|---|---|---|---|
| Can genotypegvcf input multi-sample g.vcf files? | 4 | 997 | August 9, 2024 | |
| No software to combine .gvcf files in 4.0 | 12 | 3546 | December 12, 2024 | |
| GenotypeGVCF in Parabricks 4.3.2 not using GPUs and ending with error | 4 | 30 | March 17, 2026 | |
| NVIDIA Parabricks Germline HaplotypeCaller WGS for up to 50X | 0 | 702 | April 22, 2024 | |
| Several sample usage in parabricks haplotypecaller | 0 | 64 | September 4, 2024 | |
| Haplotypecaller producing an empty VCF file | 7 | 610 | October 9, 2024 | |
| Add more ploidy levels for gatk parabricks please | 0 | 720 | March 9, 2024 | |
| Genotype-only mode with HaplotypeCaller | 0 | 33 | January 9, 2026 | |
| Use genotypegvcf with GenomicsDB workspace | 2 | 1280 | December 5, 2022 | |
| Genotypegvcf --all-sites flag | 1 | 103 | October 11, 2024 |