parabricks 4.0.1, parabricsk haplotypecaller can’t generate gvcf.gz, but only gvcf, also the genotypegvcf .
Related topics
Topic | Replies | Views | Activity | |
---|---|---|---|---|
Use genotypegvcf with GenomicsDB workspace | 2 | 1135 | December 5, 2022 | |
No software to combine .gvcf files in 4.0 | 12 | 3115 | December 12, 2024 | |
Where to find the version of tools used in the pipelines for the VCF files? | 1 | 1164 | May 31, 2022 | |
Error/Bug In running HaplotypeCaller | 0 | 727 | February 20, 2024 | |
Genotypegvcf input more gvcf files and add -L option? | 1 | 57 | December 6, 2024 | |
NVIDIA Parabricks Germline HaplotypeCaller WGS for up to 50X | 0 | 661 | April 22, 2024 | |
Can genotypegvcf input multi-sample g.vcf files? | 4 | 819 | August 9, 2024 | |
[v4.0 vs v3.6] Germline pipeline had difference in header in GVCF file | 1 | 1186 | March 10, 2023 | |
Haplotypecaller batch mode | 2 | 1003 | July 17, 2023 | |
How could I compare variant calling results? | 5 | 894 | October 12, 2021 |