Error installing keras

Hi Experts

I have used the guide :

http://fizzylogic.nl/2017/11/09/embedded-ai-the-nvidia-jetson-tx1/

To install keras.

I checked that Tensorflow was installed corect (import tensorflow). But when I tried to install
Keras I got errors when it installed h5py:

(snippet of error messages):

aarch64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -g -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DH5_USE_16_API -I./h5py -I/tmp/pip-build-aza46cdn/h5py/lzf -I/opt/local/include -I/usr/local/include -I/home/ubuntu/.local/lib/python3.5/site-packages/numpy/core/include -I/usr/include/python3.5m -c /tmp/pip-build-aza46cdn/h5py/h5py/defs.c -o build/temp.linux-aarch64-3.5/tmp/pip-build-aza46cdn/h5py/h5py/defs.o
In file included from /home/ubuntu/.local/lib/python3.5/site-packages/numpy/core/include/numpy/ndarraytypes.h:1816:0,
from /home/ubuntu/.local/lib/python3.5/site-packages/numpy/core/include/numpy/ndarrayobject.h:18,
from /home/ubuntu/.local/lib/python3.5/site-packages/numpy/core/include/numpy/arrayobject.h:4,
from /tmp/pip-build-aza46cdn/h5py/h5py/api_compat.h:26,
from /tmp/pip-build-aza46cdn/h5py/h5py/defs.c:611:
/home/ubuntu/.local/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " “#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION” [-Wcpp]
#warning "Using deprecated NumPy API, disable it by "
^
In file included from /tmp/pip-build-aza46cdn/h5py/h5py/defs.c:611:0:
/tmp/pip-build-aza46cdn/h5py/h5py/api_compat.h:27:18: fatal error: hdf5.h: No such file or directory
compilation terminated.
error: command ‘aarch64-linux-gnu-gcc’ failed with exit status 1

Any hints?

Thanks,

Sojohan

Hi,

Could you try if these commands help?

$ sudo ln -s /usr/lib/aarch64-linux-gnu/libhdf5_serial.so.10 /usr/lib/aarch64-linux-gnu/libhdf5.so
$ sudo ln -s /usr/lib/aarch64-linux-gnu/libhdf5_serial_hl.so.10 /usr/lib/aarch64-linux-gnu/libhdf5_hl.so

Thanks.

Hi AastaLLL

That solved the problem.

Thanks,
Sojohans

Hi AastaLLL

I flashed my tx1 with jetpak 3.3. I installed version 1.10 tensorflow. I have used your trick:

$ sudo ln -s /usr/lib/aarch64-linux-gnu/libhdf5_serial.so.10 /usr/lib/aarch64-linux-gnu/libhdf5.so
$ sudo ln -s /usr/lib/aarch64-linux-gnu/libhdf5_serial_hl.so.10 /usr/lib/aarch64-linux-gnu/libhdf5_hl.so

But when I then installed Keras I got the error:

/home/ubuntu/.local/lib/python3.5/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: #warning "Using deprecated NumPy API, disable it by " “#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION” [-Wcpp]
#warning "Using deprecated NumPy API, disable it by "
^
In file included from /tmp/pip-build-0diw_zbq/h5py/h5py/defs.c:611:0:
/tmp/pip-build-0diw_zbq/h5py/h5py/api_compat.h:27:18: fatal error: hdf5.h: No such file or directory
compilation terminated.
error: command ‘aarch64-linux-gnu-gcc’ failed with exit status 1

Do you have any hints?

Thanks

Sojohans

Hi,

Could you check the h5py library installation with this command:

dpkg -l | grep hdf5

Thanks.

Hi AastaLLL

It didn’t give me anything…

ubuntu@tegra-ubuntu:~$ dpkg -l | grep hdf5
ubuntu@tegra-ubuntu:~$

sojohans

Hi,

It looks like you haven’t installed the dependency of Keras.
You can find the requirement on this page:
https://keras.io/#installation

For your use case, please install hdf5 with this command:

pip install h5py

Thanks.

Hi AastaLLL

When I tried to install h5py I got this error:

Collecting h5py
Downloading https://files.pythonhosted.org/packages/74/5d/6f11a5fffc3d8884bb8d6c06abbee0b3d7c8c81bde9819979208ba823a47/h5py-2.8.0.tar.gz (274kB)
100% |████████████████████████████████| 276kB 553kB/s
Requirement already satisfied (use --upgrade to upgrade): numpy>=1.7 in ./.local/lib/python3.5/site-packages (from h5py)
Requirement already satisfied (use --upgrade to upgrade): six in ./.local/lib/python3.5/site-packages (from h5py)
Installing collected packages: h5py
Running setup.py install for h5py … error
Complete output from command /usr/bin/python3 -u -c “import setuptools, tokenize;file=‘/tmp/pip-build-lz6k0h4z/h5py/setup.py’;exec(compile(getattr(tokenize, ‘open’, open)(file).read().replace(‘\r\n’, ‘\n’), file, ‘exec’))” install --record /tmp/pip-l4kvu5uj-record/install-record.txt --single-version-externally-managed --compile:
running install
running build
running build_py
creating build
creating build/lib.linux-aarch64-3.5
creating build/lib.linux-aarch64-3.5/h5py
copying h5py/ipy_completer.py → build/lib.linux-aarch64-3.5/h5py
copying h5py/h5py_warnings.py → build/lib.linux-aarch64-3.5/h5py
copying h5py/version.py → build/lib.linux-aarch64-3.5/h5py
copying h5py/init.py → build/lib.linux-aarch64-3.5/h5py
copying h5py/highlevel.py → build/lib.linux-aarch64-3.5/h5py
creating build/lib.linux-aarch64-3.5/h5py/_hl
copying h5py/_hl/selections2.py → build/lib.linux-aarch64-3.5/h5py/_hl
copying h5py/_hl/dims.py → build/lib.linux-aarch64-3.5/h5py/_hl
copying h5py/_hl/datatype.py → build/lib.linux-aarch64-3.5/h5py/_hl
copying h5py/_hl/selections.py → build/lib.linux-aarch64-3.5/h5py/_hl
copying h5py/_hl/files.py → build/lib.linux-aarch64-3.5/h5py/_hl
copying h5py/_hl/compat.py → build/lib.linux-aarch64-3.5/h5py/_hl
copying h5py/_hl/init.py → build/lib.linux-aarch64-3.5/h5py/_hl
copying h5py/_hl/group.py → build/lib.linux-aarch64-3.5/h5py/_hl
copying h5py/_hl/base.py → build/lib.linux-aarch64-3.5/h5py/_hl
copying h5py/_hl/attrs.py → build/lib.linux-aarch64-3.5/h5py/_hl
copying h5py/_hl/dataset.py → build/lib.linux-aarch64-3.5/h5py/_hl
copying h5py/_hl/filters.py → build/lib.linux-aarch64-3.5/h5py/_hl
creating build/lib.linux-aarch64-3.5/h5py/tests
copying h5py/tests/common.py → build/lib.linux-aarch64-3.5/h5py/tests
copying h5py/tests/init.py → build/lib.linux-aarch64-3.5/h5py/tests
creating build/lib.linux-aarch64-3.5/h5py/tests/old
copying h5py/tests/old/test_base.py → build/lib.linux-aarch64-3.5/h5py/tests/old
copying h5py/tests/old/test_h5t.py → build/lib.linux-aarch64-3.5/h5py/tests/old
copying h5py/tests/old/test_objects.py → build/lib.linux-aarch64-3.5/h5py/tests/old
copying h5py/tests/old/test_attrs.py → build/lib.linux-aarch64-3.5/h5py/tests/old
copying h5py/tests/old/test_selections.py → build/lib.linux-aarch64-3.5/h5py/tests/old
copying h5py/tests/old/test_slicing.py → build/lib.linux-aarch64-3.5/h5py/tests/old
copying h5py/tests/old/test_h5d_direct_chunk_write.py → build/lib.linux-aarch64-3.5/h5py/tests/old
copying h5py/tests/old/test_file_image.py → build/lib.linux-aarch64-3.5/h5py/tests/old
copying h5py/tests/old/init.py → build/lib.linux-aarch64-3.5/h5py/tests/old
copying h5py/tests/old/test_file.py → build/lib.linux-aarch64-3.5/h5py/tests/old
copying h5py/tests/old/test_attrs_data.py → build/lib.linux-aarch64-3.5/h5py/tests/old
copying h5py/tests/old/test_group.py → build/lib.linux-aarch64-3.5/h5py/tests/old
copying h5py/tests/old/test_h5p.py → build/lib.linux-aarch64-3.5/h5py/tests/old
copying h5py/tests/old/test_datatype.py → build/lib.linux-aarch64-3.5/h5py/tests/old
copying h5py/tests/old/test_h5.py → build/lib.linux-aarch64-3.5/h5py/tests/old
copying h5py/tests/old/test_h5f.py → build/lib.linux-aarch64-3.5/h5py/tests/old
copying h5py/tests/old/test_dataset.py → build/lib.linux-aarch64-3.5/h5py/tests/old
copying h5py/tests/old/test_dimension_scales.py → build/lib.linux-aarch64-3.5/h5py/tests/old
creating build/lib.linux-aarch64-3.5/h5py/tests/hl
copying h5py/tests/hl/test_threads.py → build/lib.linux-aarch64-3.5/h5py/tests/hl
copying h5py/tests/hl/test_attribute_create.py → build/lib.linux-aarch64-3.5/h5py/tests/hl
copying h5py/tests/hl/test_filters.py → build/lib.linux-aarch64-3.5/h5py/tests/hl
copying h5py/tests/hl/test_dims_dimensionproxy.py → build/lib.linux-aarch64-3.5/h5py/tests/hl
copying h5py/tests/hl/init.py → build/lib.linux-aarch64-3.5/h5py/tests/hl
copying h5py/tests/hl/test_file.py → build/lib.linux-aarch64-3.5/h5py/tests/hl
copying h5py/tests/hl/test_dataset_getitem.py → build/lib.linux-aarch64-3.5/h5py/tests/hl
copying h5py/tests/hl/test_datatype.py → build/lib.linux-aarch64-3.5/h5py/tests/hl
copying h5py/tests/hl/test_dataset_swmr.py → build/lib.linux-aarch64-3.5/h5py/tests/hl
running build_ext
Autodetection skipped [libhdf5.so: cannot open shared object file: No such file or directory]
********************************************************************************
Summary of the h5py configuration

    Path to HDF5: None
    HDF5 Version: '1.8.4'
     MPI Enabled: False
Rebuild Required: True

********************************************************************************
Executing api_gen rebuild of defs
Executing cythonize()
./h5py/api_types_ext.pxd: cannot find cimported module 'mpi4py.MPI'
/tmp/pip-build-lz6k0h4z/h5py/h5py/h5p.pyx: cannot find cimported module 'mpi4py.mpi_c'
/tmp/pip-build-lz6k0h4z/h5py/h5py/h5p.pyx: cannot find cimported module 'mpi4py.libmpi'
[ 1/22] Cythonizing /tmp/pip-build-lz6k0h4z/h5py/h5py/_conv.pyx
warning: h5py/api_types_hdf5.pxd:350:2: 'H5D_layout_t' redeclared
warning: h5py/api_types_hdf5.pxd:357:2: 'H5D_alloc_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:364:2: 'H5D_space_status_t' redeclared
warning: h5py/api_types_hdf5.pxd:370:2: 'H5D_fill_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:376:2: 'H5D_fill_value_t' redeclared
warning: h5py/api_types_hdf5.pxd:388:7: 'H5F_close_degree_t' redeclared
warning: h5py/api_types_hdf5.pxd:394:2: 'H5FD_mem_t' redeclared
warning: h5py/api_types_hdf5.pxd:492:2: 'H5T_cset_t' redeclared
warning: h5py/api_types_hdf5.pxd:671:7: 'H5Z_EDC_t' redeclared
warning: h5py/api_types_hdf5.pxd:351:4: 'H5D_LAYOUT_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:352:4: 'H5D_COMPACT' redeclared
warning: h5py/api_types_hdf5.pxd:353:4: 'H5D_CONTIGUOUS' redeclared
warning: h5py/api_types_hdf5.pxd:354:4: 'H5D_CHUNKED' redeclared
warning: h5py/api_types_hdf5.pxd:355:4: 'H5D_NLAYOUTS' redeclared
warning: h5py/api_types_hdf5.pxd:358:4: 'H5D_ALLOC_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:359:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:360:4: 'H5D_ALLOC_TIME_EARLY' redeclared
warning: h5py/api_types_hdf5.pxd:361:4: 'H5D_ALLOC_TIME_LATE' redeclared
warning: h5py/api_types_hdf5.pxd:362:4: 'H5D_ALLOC_TIME_INCR' redeclared
warning: h5py/api_types_hdf5.pxd:365:4: 'H5D_SPACE_STATUS_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:366:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:367:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:368:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:371:4: 'H5D_FILL_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:372:4: 'H5D_FILL_TIME_ALLOC' redeclared
warning: h5py/api_types_hdf5.pxd:373:4: 'H5D_FILL_TIME_NEVER' redeclared
warning: h5py/api_types_hdf5.pxd:374:4: 'H5D_FILL_TIME_IFSET' redeclared
warning: h5py/api_types_hdf5.pxd:377:4: 'H5D_FILL_VALUE_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:378:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:379:4: 'H5D_FILL_VALUE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:380:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:389:4: 'H5F_CLOSE_WEAK' redeclared
warning: h5py/api_types_hdf5.pxd:390:4: 'H5F_CLOSE_SEMI' redeclared
warning: h5py/api_types_hdf5.pxd:391:4: 'H5F_CLOSE_STRONG' redeclared
warning: h5py/api_types_hdf5.pxd:392:4: 'H5F_CLOSE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:395:4: 'H5FD_MEM_NOLIST' redeclared
warning: h5py/api_types_hdf5.pxd:396:4: 'H5FD_MEM_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:397:4: 'H5FD_MEM_SUPER' redeclared
warning: h5py/api_types_hdf5.pxd:398:4: 'H5FD_MEM_BTREE' redeclared
warning: h5py/api_types_hdf5.pxd:399:4: 'H5FD_MEM_DRAW' redeclared
warning: h5py/api_types_hdf5.pxd:400:4: 'H5FD_MEM_GHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:401:4: 'H5FD_MEM_LHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:402:4: 'H5FD_MEM_OHDR' redeclared
warning: h5py/api_types_hdf5.pxd:403:4: 'H5FD_MEM_NTYPES' redeclared
warning: h5py/api_types_hdf5.pxd:493:4: 'H5T_CSET_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:494:4: 'H5T_CSET_ASCII' redeclared
warning: h5py/api_types_hdf5.pxd:637:2: 'H5Z_filter_t' redeclared
warning: h5py/api_types_hdf5.pxd:672:6: 'H5Z_ERROR_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:673:6: 'H5Z_DISABLE_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:674:6: 'H5Z_ENABLE_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:675:6: 'H5Z_NO_EDC' redeclared
[ 2/22] Cythonizing /tmp/pip-build-lz6k0h4z/h5py/h5py/_errors.pyx
warning: h5py/api_types_hdf5.pxd:350:2: 'H5D_layout_t' redeclared
warning: h5py/api_types_hdf5.pxd:357:2: 'H5D_alloc_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:364:2: 'H5D_space_status_t' redeclared
warning: h5py/api_types_hdf5.pxd:370:2: 'H5D_fill_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:376:2: 'H5D_fill_value_t' redeclared
warning: h5py/api_types_hdf5.pxd:388:7: 'H5F_close_degree_t' redeclared
warning: h5py/api_types_hdf5.pxd:394:2: 'H5FD_mem_t' redeclared
warning: h5py/api_types_hdf5.pxd:492:2: 'H5T_cset_t' redeclared
warning: h5py/api_types_hdf5.pxd:671:7: 'H5Z_EDC_t' redeclared
warning: h5py/api_types_hdf5.pxd:351:4: 'H5D_LAYOUT_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:352:4: 'H5D_COMPACT' redeclared
warning: h5py/api_types_hdf5.pxd:353:4: 'H5D_CONTIGUOUS' redeclared
warning: h5py/api_types_hdf5.pxd:354:4: 'H5D_CHUNKED' redeclared
warning: h5py/api_types_hdf5.pxd:355:4: 'H5D_NLAYOUTS' redeclared
warning: h5py/api_types_hdf5.pxd:358:4: 'H5D_ALLOC_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:359:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:360:4: 'H5D_ALLOC_TIME_EARLY' redeclared
warning: h5py/api_types_hdf5.pxd:361:4: 'H5D_ALLOC_TIME_LATE' redeclared
warning: h5py/api_types_hdf5.pxd:362:4: 'H5D_ALLOC_TIME_INCR' redeclared
warning: h5py/api_types_hdf5.pxd:365:4: 'H5D_SPACE_STATUS_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:366:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:367:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:368:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:371:4: 'H5D_FILL_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:372:4: 'H5D_FILL_TIME_ALLOC' redeclared
warning: h5py/api_types_hdf5.pxd:373:4: 'H5D_FILL_TIME_NEVER' redeclared
warning: h5py/api_types_hdf5.pxd:374:4: 'H5D_FILL_TIME_IFSET' redeclared
warning: h5py/api_types_hdf5.pxd:377:4: 'H5D_FILL_VALUE_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:378:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:379:4: 'H5D_FILL_VALUE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:380:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:389:4: 'H5F_CLOSE_WEAK' redeclared
warning: h5py/api_types_hdf5.pxd:390:4: 'H5F_CLOSE_SEMI' redeclared
warning: h5py/api_types_hdf5.pxd:391:4: 'H5F_CLOSE_STRONG' redeclared
warning: h5py/api_types_hdf5.pxd:392:4: 'H5F_CLOSE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:395:4: 'H5FD_MEM_NOLIST' redeclared
warning: h5py/api_types_hdf5.pxd:396:4: 'H5FD_MEM_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:397:4: 'H5FD_MEM_SUPER' redeclared
warning: h5py/api_types_hdf5.pxd:398:4: 'H5FD_MEM_BTREE' redeclared
warning: h5py/api_types_hdf5.pxd:399:4: 'H5FD_MEM_DRAW' redeclared
warning: h5py/api_types_hdf5.pxd:400:4: 'H5FD_MEM_GHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:401:4: 'H5FD_MEM_LHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:402:4: 'H5FD_MEM_OHDR' redeclared
warning: h5py/api_types_hdf5.pxd:403:4: 'H5FD_MEM_NTYPES' redeclared
warning: h5py/api_types_hdf5.pxd:493:4: 'H5T_CSET_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:494:4: 'H5T_CSET_ASCII' redeclared
warning: h5py/api_types_hdf5.pxd:637:2: 'H5Z_filter_t' redeclared
warning: h5py/api_types_hdf5.pxd:672:6: 'H5Z_ERROR_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:673:6: 'H5Z_DISABLE_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:674:6: 'H5Z_ENABLE_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:675:6: 'H5Z_NO_EDC' redeclared
[ 3/22] Cythonizing /tmp/pip-build-lz6k0h4z/h5py/h5py/_objects.pyx
warning: h5py/api_types_hdf5.pxd:350:2: 'H5D_layout_t' redeclared
warning: h5py/api_types_hdf5.pxd:357:2: 'H5D_alloc_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:364:2: 'H5D_space_status_t' redeclared
warning: h5py/api_types_hdf5.pxd:370:2: 'H5D_fill_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:376:2: 'H5D_fill_value_t' redeclared
warning: h5py/api_types_hdf5.pxd:388:7: 'H5F_close_degree_t' redeclared
warning: h5py/api_types_hdf5.pxd:394:2: 'H5FD_mem_t' redeclared
warning: h5py/api_types_hdf5.pxd:492:2: 'H5T_cset_t' redeclared
warning: h5py/api_types_hdf5.pxd:671:7: 'H5Z_EDC_t' redeclared
warning: h5py/api_types_hdf5.pxd:351:4: 'H5D_LAYOUT_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:352:4: 'H5D_COMPACT' redeclared
warning: h5py/api_types_hdf5.pxd:353:4: 'H5D_CONTIGUOUS' redeclared
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warning: h5py/api_types_hdf5.pxd:355:4: 'H5D_NLAYOUTS' redeclared
warning: h5py/api_types_hdf5.pxd:358:4: 'H5D_ALLOC_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:359:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:360:4: 'H5D_ALLOC_TIME_EARLY' redeclared
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warning: h5py/api_types_hdf5.pxd:362:4: 'H5D_ALLOC_TIME_INCR' redeclared
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warning: h5py/api_types_hdf5.pxd:366:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:367:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:368:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:371:4: 'H5D_FILL_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:372:4: 'H5D_FILL_TIME_ALLOC' redeclared
warning: h5py/api_types_hdf5.pxd:373:4: 'H5D_FILL_TIME_NEVER' redeclared
warning: h5py/api_types_hdf5.pxd:374:4: 'H5D_FILL_TIME_IFSET' redeclared
warning: h5py/api_types_hdf5.pxd:377:4: 'H5D_FILL_VALUE_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:378:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:379:4: 'H5D_FILL_VALUE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:380:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:389:4: 'H5F_CLOSE_WEAK' redeclared
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warning: h5py/api_types_hdf5.pxd:391:4: 'H5F_CLOSE_STRONG' redeclared
warning: h5py/api_types_hdf5.pxd:392:4: 'H5F_CLOSE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:395:4: 'H5FD_MEM_NOLIST' redeclared
warning: h5py/api_types_hdf5.pxd:396:4: 'H5FD_MEM_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:397:4: 'H5FD_MEM_SUPER' redeclared
warning: h5py/api_types_hdf5.pxd:398:4: 'H5FD_MEM_BTREE' redeclared
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warning: h5py/api_types_hdf5.pxd:400:4: 'H5FD_MEM_GHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:401:4: 'H5FD_MEM_LHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:402:4: 'H5FD_MEM_OHDR' redeclared
warning: h5py/api_types_hdf5.pxd:403:4: 'H5FD_MEM_NTYPES' redeclared
warning: h5py/api_types_hdf5.pxd:493:4: 'H5T_CSET_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:494:4: 'H5T_CSET_ASCII' redeclared
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[ 4/22] Cythonizing /tmp/pip-build-lz6k0h4z/h5py/h5py/_proxy.pyx
warning: h5py/api_types_hdf5.pxd:350:2: 'H5D_layout_t' redeclared
warning: h5py/api_types_hdf5.pxd:357:2: 'H5D_alloc_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:364:2: 'H5D_space_status_t' redeclared
warning: h5py/api_types_hdf5.pxd:370:2: 'H5D_fill_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:376:2: 'H5D_fill_value_t' redeclared
warning: h5py/api_types_hdf5.pxd:388:7: 'H5F_close_degree_t' redeclared
warning: h5py/api_types_hdf5.pxd:394:2: 'H5FD_mem_t' redeclared
warning: h5py/api_types_hdf5.pxd:492:2: 'H5T_cset_t' redeclared
warning: h5py/api_types_hdf5.pxd:671:7: 'H5Z_EDC_t' redeclared
warning: h5py/api_types_hdf5.pxd:351:4: 'H5D_LAYOUT_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:352:4: 'H5D_COMPACT' redeclared
warning: h5py/api_types_hdf5.pxd:353:4: 'H5D_CONTIGUOUS' redeclared
warning: h5py/api_types_hdf5.pxd:354:4: 'H5D_CHUNKED' redeclared
warning: h5py/api_types_hdf5.pxd:355:4: 'H5D_NLAYOUTS' redeclared
warning: h5py/api_types_hdf5.pxd:358:4: 'H5D_ALLOC_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:359:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:360:4: 'H5D_ALLOC_TIME_EARLY' redeclared
warning: h5py/api_types_hdf5.pxd:361:4: 'H5D_ALLOC_TIME_LATE' redeclared
warning: h5py/api_types_hdf5.pxd:362:4: 'H5D_ALLOC_TIME_INCR' redeclared
warning: h5py/api_types_hdf5.pxd:365:4: 'H5D_SPACE_STATUS_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:366:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:367:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:368:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:371:4: 'H5D_FILL_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:372:4: 'H5D_FILL_TIME_ALLOC' redeclared
warning: h5py/api_types_hdf5.pxd:373:4: 'H5D_FILL_TIME_NEVER' redeclared
warning: h5py/api_types_hdf5.pxd:374:4: 'H5D_FILL_TIME_IFSET' redeclared
warning: h5py/api_types_hdf5.pxd:377:4: 'H5D_FILL_VALUE_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:378:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:379:4: 'H5D_FILL_VALUE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:380:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:389:4: 'H5F_CLOSE_WEAK' redeclared
warning: h5py/api_types_hdf5.pxd:390:4: 'H5F_CLOSE_SEMI' redeclared
warning: h5py/api_types_hdf5.pxd:391:4: 'H5F_CLOSE_STRONG' redeclared
warning: h5py/api_types_hdf5.pxd:392:4: 'H5F_CLOSE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:395:4: 'H5FD_MEM_NOLIST' redeclared
warning: h5py/api_types_hdf5.pxd:396:4: 'H5FD_MEM_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:397:4: 'H5FD_MEM_SUPER' redeclared
warning: h5py/api_types_hdf5.pxd:398:4: 'H5FD_MEM_BTREE' redeclared
warning: h5py/api_types_hdf5.pxd:399:4: 'H5FD_MEM_DRAW' redeclared
warning: h5py/api_types_hdf5.pxd:400:4: 'H5FD_MEM_GHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:401:4: 'H5FD_MEM_LHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:402:4: 'H5FD_MEM_OHDR' redeclared
warning: h5py/api_types_hdf5.pxd:403:4: 'H5FD_MEM_NTYPES' redeclared
warning: h5py/api_types_hdf5.pxd:493:4: 'H5T_CSET_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:494:4: 'H5T_CSET_ASCII' redeclared
warning: h5py/api_types_hdf5.pxd:637:2: 'H5Z_filter_t' redeclared
warning: h5py/api_types_hdf5.pxd:672:6: 'H5Z_ERROR_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:673:6: 'H5Z_DISABLE_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:674:6: 'H5Z_ENABLE_EDC' redeclared
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[ 5/22] Cythonizing /tmp/pip-build-lz6k0h4z/h5py/h5py/defs.pyx
warning: h5py/api_types_hdf5.pxd:350:2: 'H5D_layout_t' redeclared
warning: h5py/api_types_hdf5.pxd:357:2: 'H5D_alloc_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:364:2: 'H5D_space_status_t' redeclared
warning: h5py/api_types_hdf5.pxd:370:2: 'H5D_fill_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:376:2: 'H5D_fill_value_t' redeclared
warning: h5py/api_types_hdf5.pxd:388:7: 'H5F_close_degree_t' redeclared
warning: h5py/api_types_hdf5.pxd:394:2: 'H5FD_mem_t' redeclared
warning: h5py/api_types_hdf5.pxd:492:2: 'H5T_cset_t' redeclared
warning: h5py/api_types_hdf5.pxd:671:7: 'H5Z_EDC_t' redeclared
warning: h5py/api_types_hdf5.pxd:351:4: 'H5D_LAYOUT_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:352:4: 'H5D_COMPACT' redeclared
warning: h5py/api_types_hdf5.pxd:353:4: 'H5D_CONTIGUOUS' redeclared
warning: h5py/api_types_hdf5.pxd:354:4: 'H5D_CHUNKED' redeclared
warning: h5py/api_types_hdf5.pxd:355:4: 'H5D_NLAYOUTS' redeclared
warning: h5py/api_types_hdf5.pxd:358:4: 'H5D_ALLOC_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:359:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:360:4: 'H5D_ALLOC_TIME_EARLY' redeclared
warning: h5py/api_types_hdf5.pxd:361:4: 'H5D_ALLOC_TIME_LATE' redeclared
warning: h5py/api_types_hdf5.pxd:362:4: 'H5D_ALLOC_TIME_INCR' redeclared
warning: h5py/api_types_hdf5.pxd:365:4: 'H5D_SPACE_STATUS_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:366:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:367:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:368:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:371:4: 'H5D_FILL_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:372:4: 'H5D_FILL_TIME_ALLOC' redeclared
warning: h5py/api_types_hdf5.pxd:373:4: 'H5D_FILL_TIME_NEVER' redeclared
warning: h5py/api_types_hdf5.pxd:374:4: 'H5D_FILL_TIME_IFSET' redeclared
warning: h5py/api_types_hdf5.pxd:377:4: 'H5D_FILL_VALUE_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:378:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:379:4: 'H5D_FILL_VALUE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:380:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:389:4: 'H5F_CLOSE_WEAK' redeclared
warning: h5py/api_types_hdf5.pxd:390:4: 'H5F_CLOSE_SEMI' redeclared
warning: h5py/api_types_hdf5.pxd:391:4: 'H5F_CLOSE_STRONG' redeclared
warning: h5py/api_types_hdf5.pxd:392:4: 'H5F_CLOSE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:395:4: 'H5FD_MEM_NOLIST' redeclared
warning: h5py/api_types_hdf5.pxd:396:4: 'H5FD_MEM_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:397:4: 'H5FD_MEM_SUPER' redeclared
warning: h5py/api_types_hdf5.pxd:398:4: 'H5FD_MEM_BTREE' redeclared
warning: h5py/api_types_hdf5.pxd:399:4: 'H5FD_MEM_DRAW' redeclared
warning: h5py/api_types_hdf5.pxd:400:4: 'H5FD_MEM_GHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:401:4: 'H5FD_MEM_LHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:402:4: 'H5FD_MEM_OHDR' redeclared
warning: h5py/api_types_hdf5.pxd:403:4: 'H5FD_MEM_NTYPES' redeclared
warning: h5py/api_types_hdf5.pxd:493:4: 'H5T_CSET_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:494:4: 'H5T_CSET_ASCII' redeclared
warning: h5py/api_types_hdf5.pxd:637:2: 'H5Z_filter_t' redeclared
warning: h5py/api_types_hdf5.pxd:672:6: 'H5Z_ERROR_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:673:6: 'H5Z_DISABLE_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:674:6: 'H5Z_ENABLE_EDC' redeclared
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[ 6/22] Cythonizing /tmp/pip-build-lz6k0h4z/h5py/h5py/h5.pyx
warning: h5py/api_types_hdf5.pxd:350:2: 'H5D_layout_t' redeclared
warning: h5py/api_types_hdf5.pxd:357:2: 'H5D_alloc_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:364:2: 'H5D_space_status_t' redeclared
warning: h5py/api_types_hdf5.pxd:370:2: 'H5D_fill_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:376:2: 'H5D_fill_value_t' redeclared
warning: h5py/api_types_hdf5.pxd:388:7: 'H5F_close_degree_t' redeclared
warning: h5py/api_types_hdf5.pxd:394:2: 'H5FD_mem_t' redeclared
warning: h5py/api_types_hdf5.pxd:492:2: 'H5T_cset_t' redeclared
warning: h5py/api_types_hdf5.pxd:671:7: 'H5Z_EDC_t' redeclared
warning: h5py/api_types_hdf5.pxd:351:4: 'H5D_LAYOUT_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:352:4: 'H5D_COMPACT' redeclared
warning: h5py/api_types_hdf5.pxd:353:4: 'H5D_CONTIGUOUS' redeclared
warning: h5py/api_types_hdf5.pxd:354:4: 'H5D_CHUNKED' redeclared
warning: h5py/api_types_hdf5.pxd:355:4: 'H5D_NLAYOUTS' redeclared
warning: h5py/api_types_hdf5.pxd:358:4: 'H5D_ALLOC_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:359:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:360:4: 'H5D_ALLOC_TIME_EARLY' redeclared
warning: h5py/api_types_hdf5.pxd:361:4: 'H5D_ALLOC_TIME_LATE' redeclared
warning: h5py/api_types_hdf5.pxd:362:4: 'H5D_ALLOC_TIME_INCR' redeclared
warning: h5py/api_types_hdf5.pxd:365:4: 'H5D_SPACE_STATUS_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:366:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:367:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:368:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:371:4: 'H5D_FILL_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:372:4: 'H5D_FILL_TIME_ALLOC' redeclared
warning: h5py/api_types_hdf5.pxd:373:4: 'H5D_FILL_TIME_NEVER' redeclared
warning: h5py/api_types_hdf5.pxd:374:4: 'H5D_FILL_TIME_IFSET' redeclared
warning: h5py/api_types_hdf5.pxd:377:4: 'H5D_FILL_VALUE_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:378:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:379:4: 'H5D_FILL_VALUE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:380:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:389:4: 'H5F_CLOSE_WEAK' redeclared
warning: h5py/api_types_hdf5.pxd:390:4: 'H5F_CLOSE_SEMI' redeclared
warning: h5py/api_types_hdf5.pxd:391:4: 'H5F_CLOSE_STRONG' redeclared
warning: h5py/api_types_hdf5.pxd:392:4: 'H5F_CLOSE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:395:4: 'H5FD_MEM_NOLIST' redeclared
warning: h5py/api_types_hdf5.pxd:396:4: 'H5FD_MEM_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:397:4: 'H5FD_MEM_SUPER' redeclared
warning: h5py/api_types_hdf5.pxd:398:4: 'H5FD_MEM_BTREE' redeclared
warning: h5py/api_types_hdf5.pxd:399:4: 'H5FD_MEM_DRAW' redeclared
warning: h5py/api_types_hdf5.pxd:400:4: 'H5FD_MEM_GHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:401:4: 'H5FD_MEM_LHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:402:4: 'H5FD_MEM_OHDR' redeclared
warning: h5py/api_types_hdf5.pxd:403:4: 'H5FD_MEM_NTYPES' redeclared
warning: h5py/api_types_hdf5.pxd:493:4: 'H5T_CSET_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:494:4: 'H5T_CSET_ASCII' redeclared
warning: h5py/api_types_hdf5.pxd:637:2: 'H5Z_filter_t' redeclared
warning: h5py/api_types_hdf5.pxd:672:6: 'H5Z_ERROR_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:673:6: 'H5Z_DISABLE_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:674:6: 'H5Z_ENABLE_EDC' redeclared
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[ 7/22] Cythonizing /tmp/pip-build-lz6k0h4z/h5py/h5py/h5a.pyx
warning: h5py/api_types_hdf5.pxd:350:2: 'H5D_layout_t' redeclared
warning: h5py/api_types_hdf5.pxd:357:2: 'H5D_alloc_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:364:2: 'H5D_space_status_t' redeclared
warning: h5py/api_types_hdf5.pxd:370:2: 'H5D_fill_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:376:2: 'H5D_fill_value_t' redeclared
warning: h5py/api_types_hdf5.pxd:388:7: 'H5F_close_degree_t' redeclared
warning: h5py/api_types_hdf5.pxd:394:2: 'H5FD_mem_t' redeclared
warning: h5py/api_types_hdf5.pxd:492:2: 'H5T_cset_t' redeclared
warning: h5py/api_types_hdf5.pxd:671:7: 'H5Z_EDC_t' redeclared
warning: h5py/api_types_hdf5.pxd:351:4: 'H5D_LAYOUT_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:352:4: 'H5D_COMPACT' redeclared
warning: h5py/api_types_hdf5.pxd:353:4: 'H5D_CONTIGUOUS' redeclared
warning: h5py/api_types_hdf5.pxd:354:4: 'H5D_CHUNKED' redeclared
warning: h5py/api_types_hdf5.pxd:355:4: 'H5D_NLAYOUTS' redeclared
warning: h5py/api_types_hdf5.pxd:358:4: 'H5D_ALLOC_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:359:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:360:4: 'H5D_ALLOC_TIME_EARLY' redeclared
warning: h5py/api_types_hdf5.pxd:361:4: 'H5D_ALLOC_TIME_LATE' redeclared
warning: h5py/api_types_hdf5.pxd:362:4: 'H5D_ALLOC_TIME_INCR' redeclared
warning: h5py/api_types_hdf5.pxd:365:4: 'H5D_SPACE_STATUS_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:366:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:367:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:368:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:371:4: 'H5D_FILL_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:372:4: 'H5D_FILL_TIME_ALLOC' redeclared
warning: h5py/api_types_hdf5.pxd:373:4: 'H5D_FILL_TIME_NEVER' redeclared
warning: h5py/api_types_hdf5.pxd:374:4: 'H5D_FILL_TIME_IFSET' redeclared
warning: h5py/api_types_hdf5.pxd:377:4: 'H5D_FILL_VALUE_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:378:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:379:4: 'H5D_FILL_VALUE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:380:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:389:4: 'H5F_CLOSE_WEAK' redeclared
warning: h5py/api_types_hdf5.pxd:390:4: 'H5F_CLOSE_SEMI' redeclared
warning: h5py/api_types_hdf5.pxd:391:4: 'H5F_CLOSE_STRONG' redeclared
warning: h5py/api_types_hdf5.pxd:392:4: 'H5F_CLOSE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:395:4: 'H5FD_MEM_NOLIST' redeclared
warning: h5py/api_types_hdf5.pxd:396:4: 'H5FD_MEM_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:397:4: 'H5FD_MEM_SUPER' redeclared
warning: h5py/api_types_hdf5.pxd:398:4: 'H5FD_MEM_BTREE' redeclared
warning: h5py/api_types_hdf5.pxd:399:4: 'H5FD_MEM_DRAW' redeclared
warning: h5py/api_types_hdf5.pxd:400:4: 'H5FD_MEM_GHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:401:4: 'H5FD_MEM_LHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:402:4: 'H5FD_MEM_OHDR' redeclared
warning: h5py/api_types_hdf5.pxd:403:4: 'H5FD_MEM_NTYPES' redeclared
warning: h5py/api_types_hdf5.pxd:493:4: 'H5T_CSET_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:494:4: 'H5T_CSET_ASCII' redeclared
warning: h5py/api_types_hdf5.pxd:637:2: 'H5Z_filter_t' redeclared
warning: h5py/api_types_hdf5.pxd:672:6: 'H5Z_ERROR_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:673:6: 'H5Z_DISABLE_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:674:6: 'H5Z_ENABLE_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:675:6: 'H5Z_NO_EDC' redeclared
[ 8/22] Cythonizing /tmp/pip-build-lz6k0h4z/h5py/h5py/h5ac.pyx
warning: h5py/api_types_hdf5.pxd:350:2: 'H5D_layout_t' redeclared
warning: h5py/api_types_hdf5.pxd:357:2: 'H5D_alloc_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:364:2: 'H5D_space_status_t' redeclared
warning: h5py/api_types_hdf5.pxd:370:2: 'H5D_fill_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:376:2: 'H5D_fill_value_t' redeclared
warning: h5py/api_types_hdf5.pxd:388:7: 'H5F_close_degree_t' redeclared
warning: h5py/api_types_hdf5.pxd:394:2: 'H5FD_mem_t' redeclared
warning: h5py/api_types_hdf5.pxd:492:2: 'H5T_cset_t' redeclared
warning: h5py/api_types_hdf5.pxd:671:7: 'H5Z_EDC_t' redeclared
warning: h5py/api_types_hdf5.pxd:351:4: 'H5D_LAYOUT_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:352:4: 'H5D_COMPACT' redeclared
warning: h5py/api_types_hdf5.pxd:353:4: 'H5D_CONTIGUOUS' redeclared
warning: h5py/api_types_hdf5.pxd:354:4: 'H5D_CHUNKED' redeclared
warning: h5py/api_types_hdf5.pxd:355:4: 'H5D_NLAYOUTS' redeclared
warning: h5py/api_types_hdf5.pxd:358:4: 'H5D_ALLOC_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:359:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:360:4: 'H5D_ALLOC_TIME_EARLY' redeclared
warning: h5py/api_types_hdf5.pxd:361:4: 'H5D_ALLOC_TIME_LATE' redeclared
warning: h5py/api_types_hdf5.pxd:362:4: 'H5D_ALLOC_TIME_INCR' redeclared
warning: h5py/api_types_hdf5.pxd:365:4: 'H5D_SPACE_STATUS_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:366:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:367:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:368:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:371:4: 'H5D_FILL_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:372:4: 'H5D_FILL_TIME_ALLOC' redeclared
warning: h5py/api_types_hdf5.pxd:373:4: 'H5D_FILL_TIME_NEVER' redeclared
warning: h5py/api_types_hdf5.pxd:374:4: 'H5D_FILL_TIME_IFSET' redeclared
warning: h5py/api_types_hdf5.pxd:377:4: 'H5D_FILL_VALUE_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:378:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:379:4: 'H5D_FILL_VALUE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:380:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:389:4: 'H5F_CLOSE_WEAK' redeclared
warning: h5py/api_types_hdf5.pxd:390:4: 'H5F_CLOSE_SEMI' redeclared
warning: h5py/api_types_hdf5.pxd:391:4: 'H5F_CLOSE_STRONG' redeclared
warning: h5py/api_types_hdf5.pxd:392:4: 'H5F_CLOSE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:395:4: 'H5FD_MEM_NOLIST' redeclared
warning: h5py/api_types_hdf5.pxd:396:4: 'H5FD_MEM_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:397:4: 'H5FD_MEM_SUPER' redeclared
warning: h5py/api_types_hdf5.pxd:398:4: 'H5FD_MEM_BTREE' redeclared
warning: h5py/api_types_hdf5.pxd:399:4: 'H5FD_MEM_DRAW' redeclared
warning: h5py/api_types_hdf5.pxd:400:4: 'H5FD_MEM_GHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:401:4: 'H5FD_MEM_LHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:402:4: 'H5FD_MEM_OHDR' redeclared
warning: h5py/api_types_hdf5.pxd:403:4: 'H5FD_MEM_NTYPES' redeclared
warning: h5py/api_types_hdf5.pxd:493:4: 'H5T_CSET_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:494:4: 'H5T_CSET_ASCII' redeclared
warning: h5py/api_types_hdf5.pxd:637:2: 'H5Z_filter_t' redeclared
warning: h5py/api_types_hdf5.pxd:672:6: 'H5Z_ERROR_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:673:6: 'H5Z_DISABLE_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:674:6: 'H5Z_ENABLE_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:675:6: 'H5Z_NO_EDC' redeclared
[ 9/22] Cythonizing /tmp/pip-build-lz6k0h4z/h5py/h5py/h5d.pyx
warning: h5py/api_types_hdf5.pxd:350:2: 'H5D_layout_t' redeclared
warning: h5py/api_types_hdf5.pxd:357:2: 'H5D_alloc_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:364:2: 'H5D_space_status_t' redeclared
warning: h5py/api_types_hdf5.pxd:370:2: 'H5D_fill_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:376:2: 'H5D_fill_value_t' redeclared
warning: h5py/api_types_hdf5.pxd:388:7: 'H5F_close_degree_t' redeclared
warning: h5py/api_types_hdf5.pxd:394:2: 'H5FD_mem_t' redeclared
warning: h5py/api_types_hdf5.pxd:492:2: 'H5T_cset_t' redeclared
warning: h5py/api_types_hdf5.pxd:671:7: 'H5Z_EDC_t' redeclared
warning: h5py/api_types_hdf5.pxd:351:4: 'H5D_LAYOUT_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:352:4: 'H5D_COMPACT' redeclared
warning: h5py/api_types_hdf5.pxd:353:4: 'H5D_CONTIGUOUS' redeclared
warning: h5py/api_types_hdf5.pxd:354:4: 'H5D_CHUNKED' redeclared
warning: h5py/api_types_hdf5.pxd:355:4: 'H5D_NLAYOUTS' redeclared
warning: h5py/api_types_hdf5.pxd:358:4: 'H5D_ALLOC_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:359:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:360:4: 'H5D_ALLOC_TIME_EARLY' redeclared
warning: h5py/api_types_hdf5.pxd:361:4: 'H5D_ALLOC_TIME_LATE' redeclared
warning: h5py/api_types_hdf5.pxd:362:4: 'H5D_ALLOC_TIME_INCR' redeclared
warning: h5py/api_types_hdf5.pxd:365:4: 'H5D_SPACE_STATUS_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:366:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:367:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:368:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:371:4: 'H5D_FILL_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:372:4: 'H5D_FILL_TIME_ALLOC' redeclared
warning: h5py/api_types_hdf5.pxd:373:4: 'H5D_FILL_TIME_NEVER' redeclared
warning: h5py/api_types_hdf5.pxd:374:4: 'H5D_FILL_TIME_IFSET' redeclared
warning: h5py/api_types_hdf5.pxd:377:4: 'H5D_FILL_VALUE_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:378:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:379:4: 'H5D_FILL_VALUE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:380:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:389:4: 'H5F_CLOSE_WEAK' redeclared
warning: h5py/api_types_hdf5.pxd:390:4: 'H5F_CLOSE_SEMI' redeclared
warning: h5py/api_types_hdf5.pxd:391:4: 'H5F_CLOSE_STRONG' redeclared
warning: h5py/api_types_hdf5.pxd:392:4: 'H5F_CLOSE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:395:4: 'H5FD_MEM_NOLIST' redeclared
warning: h5py/api_types_hdf5.pxd:396:4: 'H5FD_MEM_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:397:4: 'H5FD_MEM_SUPER' redeclared
warning: h5py/api_types_hdf5.pxd:398:4: 'H5FD_MEM_BTREE' redeclared
warning: h5py/api_types_hdf5.pxd:399:4: 'H5FD_MEM_DRAW' redeclared
warning: h5py/api_types_hdf5.pxd:400:4: 'H5FD_MEM_GHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:401:4: 'H5FD_MEM_LHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:402:4: 'H5FD_MEM_OHDR' redeclared
warning: h5py/api_types_hdf5.pxd:403:4: 'H5FD_MEM_NTYPES' redeclared
warning: h5py/api_types_hdf5.pxd:493:4: 'H5T_CSET_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:494:4: 'H5T_CSET_ASCII' redeclared
warning: h5py/api_types_hdf5.pxd:637:2: 'H5Z_filter_t' redeclared
warning: h5py/api_types_hdf5.pxd:672:6: 'H5Z_ERROR_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:673:6: 'H5Z_DISABLE_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:674:6: 'H5Z_ENABLE_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:675:6: 'H5Z_NO_EDC' redeclared
[10/22] Cythonizing /tmp/pip-build-lz6k0h4z/h5py/h5py/h5ds.pyx
warning: h5py/api_types_hdf5.pxd:350:2: 'H5D_layout_t' redeclared
warning: h5py/api_types_hdf5.pxd:357:2: 'H5D_alloc_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:364:2: 'H5D_space_status_t' redeclared
warning: h5py/api_types_hdf5.pxd:370:2: 'H5D_fill_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:376:2: 'H5D_fill_value_t' redeclared
warning: h5py/api_types_hdf5.pxd:388:7: 'H5F_close_degree_t' redeclared
warning: h5py/api_types_hdf5.pxd:394:2: 'H5FD_mem_t' redeclared
warning: h5py/api_types_hdf5.pxd:492:2: 'H5T_cset_t' redeclared
warning: h5py/api_types_hdf5.pxd:671:7: 'H5Z_EDC_t' redeclared
warning: h5py/api_types_hdf5.pxd:351:4: 'H5D_LAYOUT_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:352:4: 'H5D_COMPACT' redeclared
warning: h5py/api_types_hdf5.pxd:353:4: 'H5D_CONTIGUOUS' redeclared
warning: h5py/api_types_hdf5.pxd:354:4: 'H5D_CHUNKED' redeclared
warning: h5py/api_types_hdf5.pxd:355:4: 'H5D_NLAYOUTS' redeclared
warning: h5py/api_types_hdf5.pxd:358:4: 'H5D_ALLOC_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:359:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:360:4: 'H5D_ALLOC_TIME_EARLY' redeclared
warning: h5py/api_types_hdf5.pxd:361:4: 'H5D_ALLOC_TIME_LATE' redeclared
warning: h5py/api_types_hdf5.pxd:362:4: 'H5D_ALLOC_TIME_INCR' redeclared
warning: h5py/api_types_hdf5.pxd:365:4: 'H5D_SPACE_STATUS_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:366:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:367:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:368:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:371:4: 'H5D_FILL_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:372:4: 'H5D_FILL_TIME_ALLOC' redeclared
warning: h5py/api_types_hdf5.pxd:373:4: 'H5D_FILL_TIME_NEVER' redeclared
warning: h5py/api_types_hdf5.pxd:374:4: 'H5D_FILL_TIME_IFSET' redeclared
warning: h5py/api_types_hdf5.pxd:377:4: 'H5D_FILL_VALUE_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:378:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:379:4: 'H5D_FILL_VALUE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:380:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:389:4: 'H5F_CLOSE_WEAK' redeclared
warning: h5py/api_types_hdf5.pxd:390:4: 'H5F_CLOSE_SEMI' redeclared
warning: h5py/api_types_hdf5.pxd:391:4: 'H5F_CLOSE_STRONG' redeclared
warning: h5py/api_types_hdf5.pxd:392:4: 'H5F_CLOSE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:395:4: 'H5FD_MEM_NOLIST' redeclared
warning: h5py/api_types_hdf5.pxd:396:4: 'H5FD_MEM_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:397:4: 'H5FD_MEM_SUPER' redeclared
warning: h5py/api_types_hdf5.pxd:398:4: 'H5FD_MEM_BTREE' redeclared
warning: h5py/api_types_hdf5.pxd:399:4: 'H5FD_MEM_DRAW' redeclared
warning: h5py/api_types_hdf5.pxd:400:4: 'H5FD_MEM_GHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:401:4: 'H5FD_MEM_LHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:402:4: 'H5FD_MEM_OHDR' redeclared
warning: h5py/api_types_hdf5.pxd:403:4: 'H5FD_MEM_NTYPES' redeclared
warning: h5py/api_types_hdf5.pxd:493:4: 'H5T_CSET_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:494:4: 'H5T_CSET_ASCII' redeclared
warning: h5py/api_types_hdf5.pxd:637:2: 'H5Z_filter_t' redeclared
warning: h5py/api_types_hdf5.pxd:672:6: 'H5Z_ERROR_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:673:6: 'H5Z_DISABLE_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:674:6: 'H5Z_ENABLE_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:675:6: 'H5Z_NO_EDC' redeclared
[11/22] Cythonizing /tmp/pip-build-lz6k0h4z/h5py/h5py/h5f.pyx
warning: h5py/api_types_hdf5.pxd:350:2: 'H5D_layout_t' redeclared
warning: h5py/api_types_hdf5.pxd:357:2: 'H5D_alloc_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:364:2: 'H5D_space_status_t' redeclared
warning: h5py/api_types_hdf5.pxd:370:2: 'H5D_fill_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:376:2: 'H5D_fill_value_t' redeclared
warning: h5py/api_types_hdf5.pxd:388:7: 'H5F_close_degree_t' redeclared
warning: h5py/api_types_hdf5.pxd:394:2: 'H5FD_mem_t' redeclared
warning: h5py/api_types_hdf5.pxd:492:2: 'H5T_cset_t' redeclared
warning: h5py/api_types_hdf5.pxd:671:7: 'H5Z_EDC_t' redeclared
warning: h5py/api_types_hdf5.pxd:351:4: 'H5D_LAYOUT_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:352:4: 'H5D_COMPACT' redeclared
warning: h5py/api_types_hdf5.pxd:353:4: 'H5D_CONTIGUOUS' redeclared
warning: h5py/api_types_hdf5.pxd:354:4: 'H5D_CHUNKED' redeclared
warning: h5py/api_types_hdf5.pxd:355:4: 'H5D_NLAYOUTS' redeclared
warning: h5py/api_types_hdf5.pxd:358:4: 'H5D_ALLOC_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:359:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:360:4: 'H5D_ALLOC_TIME_EARLY' redeclared
warning: h5py/api_types_hdf5.pxd:361:4: 'H5D_ALLOC_TIME_LATE' redeclared
warning: h5py/api_types_hdf5.pxd:362:4: 'H5D_ALLOC_TIME_INCR' redeclared
warning: h5py/api_types_hdf5.pxd:365:4: 'H5D_SPACE_STATUS_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:366:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:367:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:368:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:371:4: 'H5D_FILL_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:372:4: 'H5D_FILL_TIME_ALLOC' redeclared
warning: h5py/api_types_hdf5.pxd:373:4: 'H5D_FILL_TIME_NEVER' redeclared
warning: h5py/api_types_hdf5.pxd:374:4: 'H5D_FILL_TIME_IFSET' redeclared
warning: h5py/api_types_hdf5.pxd:377:4: 'H5D_FILL_VALUE_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:378:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:379:4: 'H5D_FILL_VALUE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:380:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:389:4: 'H5F_CLOSE_WEAK' redeclared
warning: h5py/api_types_hdf5.pxd:390:4: 'H5F_CLOSE_SEMI' redeclared
warning: h5py/api_types_hdf5.pxd:391:4: 'H5F_CLOSE_STRONG' redeclared
warning: h5py/api_types_hdf5.pxd:392:4: 'H5F_CLOSE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:395:4: 'H5FD_MEM_NOLIST' redeclared
warning: h5py/api_types_hdf5.pxd:396:4: 'H5FD_MEM_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:397:4: 'H5FD_MEM_SUPER' redeclared
warning: h5py/api_types_hdf5.pxd:398:4: 'H5FD_MEM_BTREE' redeclared
warning: h5py/api_types_hdf5.pxd:399:4: 'H5FD_MEM_DRAW' redeclared
warning: h5py/api_types_hdf5.pxd:400:4: 'H5FD_MEM_GHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:401:4: 'H5FD_MEM_LHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:402:4: 'H5FD_MEM_OHDR' redeclared
warning: h5py/api_types_hdf5.pxd:403:4: 'H5FD_MEM_NTYPES' redeclared
warning: h5py/api_types_hdf5.pxd:493:4: 'H5T_CSET_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:494:4: 'H5T_CSET_ASCII' redeclared
warning: h5py/api_types_hdf5.pxd:637:2: 'H5Z_filter_t' redeclared
warning: h5py/api_types_hdf5.pxd:672:6: 'H5Z_ERROR_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:673:6: 'H5Z_DISABLE_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:674:6: 'H5Z_ENABLE_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:675:6: 'H5Z_NO_EDC' redeclared
[12/22] Cythonizing /tmp/pip-build-lz6k0h4z/h5py/h5py/h5fd.pyx
warning: h5py/api_types_hdf5.pxd:350:2: 'H5D_layout_t' redeclared
warning: h5py/api_types_hdf5.pxd:357:2: 'H5D_alloc_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:364:2: 'H5D_space_status_t' redeclared
warning: h5py/api_types_hdf5.pxd:370:2: 'H5D_fill_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:376:2: 'H5D_fill_value_t' redeclared
warning: h5py/api_types_hdf5.pxd:388:7: 'H5F_close_degree_t' redeclared
warning: h5py/api_types_hdf5.pxd:394:2: 'H5FD_mem_t' redeclared
warning: h5py/api_types_hdf5.pxd:492:2: 'H5T_cset_t' redeclared
warning: h5py/api_types_hdf5.pxd:671:7: 'H5Z_EDC_t' redeclared
warning: h5py/api_types_hdf5.pxd:351:4: 'H5D_LAYOUT_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:352:4: 'H5D_COMPACT' redeclared
warning: h5py/api_types_hdf5.pxd:353:4: 'H5D_CONTIGUOUS' redeclared
warning: h5py/api_types_hdf5.pxd:354:4: 'H5D_CHUNKED' redeclared
warning: h5py/api_types_hdf5.pxd:355:4: 'H5D_NLAYOUTS' redeclared
warning: h5py/api_types_hdf5.pxd:358:4: 'H5D_ALLOC_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:359:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:360:4: 'H5D_ALLOC_TIME_EARLY' redeclared
warning: h5py/api_types_hdf5.pxd:361:4: 'H5D_ALLOC_TIME_LATE' redeclared
warning: h5py/api_types_hdf5.pxd:362:4: 'H5D_ALLOC_TIME_INCR' redeclared
warning: h5py/api_types_hdf5.pxd:365:4: 'H5D_SPACE_STATUS_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:366:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:367:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:368:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:371:4: 'H5D_FILL_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:372:4: 'H5D_FILL_TIME_ALLOC' redeclared
warning: h5py/api_types_hdf5.pxd:373:4: 'H5D_FILL_TIME_NEVER' redeclared
warning: h5py/api_types_hdf5.pxd:374:4: 'H5D_FILL_TIME_IFSET' redeclared
warning: h5py/api_types_hdf5.pxd:377:4: 'H5D_FILL_VALUE_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:378:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:379:4: 'H5D_FILL_VALUE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:380:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:389:4: 'H5F_CLOSE_WEAK' redeclared
warning: h5py/api_types_hdf5.pxd:390:4: 'H5F_CLOSE_SEMI' redeclared
warning: h5py/api_types_hdf5.pxd:391:4: 'H5F_CLOSE_STRONG' redeclared
warning: h5py/api_types_hdf5.pxd:392:4: 'H5F_CLOSE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:395:4: 'H5FD_MEM_NOLIST' redeclared
warning: h5py/api_types_hdf5.pxd:396:4: 'H5FD_MEM_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:397:4: 'H5FD_MEM_SUPER' redeclared
warning: h5py/api_types_hdf5.pxd:398:4: 'H5FD_MEM_BTREE' redeclared
warning: h5py/api_types_hdf5.pxd:399:4: 'H5FD_MEM_DRAW' redeclared
warning: h5py/api_types_hdf5.pxd:400:4: 'H5FD_MEM_GHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:401:4: 'H5FD_MEM_LHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:402:4: 'H5FD_MEM_OHDR' redeclared
warning: h5py/api_types_hdf5.pxd:403:4: 'H5FD_MEM_NTYPES' redeclared
warning: h5py/api_types_hdf5.pxd:493:4: 'H5T_CSET_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:494:4: 'H5T_CSET_ASCII' redeclared
warning: h5py/api_types_hdf5.pxd:637:2: 'H5Z_filter_t' redeclared
warning: h5py/api_types_hdf5.pxd:672:6: 'H5Z_ERROR_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:673:6: 'H5Z_DISABLE_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:674:6: 'H5Z_ENABLE_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:675:6: 'H5Z_NO_EDC' redeclared
warning: h5py/h5fd.pxd:18:4: 'H5FD_MEM_NOLIST' redeclared
warning: h5py/h5fd.pxd:19:4: 'H5FD_MEM_DEFAULT' redeclared
warning: h5py/h5fd.pxd:20:4: 'H5FD_MEM_SUPER' redeclared
warning: h5py/h5fd.pxd:21:4: 'H5FD_MEM_BTREE' redeclared
warning: h5py/h5fd.pxd:22:4: 'H5FD_MEM_DRAW' redeclared
warning: h5py/h5fd.pxd:23:4: 'H5FD_MEM_GHEAP' redeclared
warning: h5py/h5fd.pxd:24:4: 'H5FD_MEM_LHEAP' redeclared
warning: h5py/h5fd.pxd:25:4: 'H5FD_MEM_OHDR' redeclared
warning: h5py/h5fd.pxd:26:4: 'H5FD_MEM_NTYPES' redeclared
warning: h5py/h5fd.pxd:31:8: 'H5FD_CORE' redeclared
warning: h5py/h5fd.pxd:32:8: 'H5FD_FAMILY' redeclared
warning: h5py/h5fd.pxd:34:8: 'H5FD_LOG' redeclared
warning: h5py/h5fd.pxd:35:8: 'H5FD_MPIO' redeclared
warning: h5py/h5fd.pxd:37:8: 'H5FD_MULTI' redeclared
warning: h5py/h5fd.pxd:38:8: 'H5FD_SEC2' redeclared
warning: h5py/h5fd.pxd:39:8: 'H5FD_STDIO' redeclared
warning: h5py/h5fd.pxd:44:6: 'H5FD_LOG_LOC_READ' redeclared
warning: h5py/h5fd.pxd:45:6: 'H5FD_LOG_LOC_WRITE' redeclared
warning: h5py/h5fd.pxd:46:6: 'H5FD_LOG_LOC_SEEK' redeclared
warning: h5py/h5fd.pxd:47:6: 'H5FD_LOG_LOC_IO' redeclared
warning: h5py/h5fd.pxd:50:6: 'H5FD_LOG_FILE_READ' redeclared
warning: h5py/h5fd.pxd:51:6: 'H5FD_LOG_FILE_WRITE' redeclared
warning: h5py/h5fd.pxd:52:6: 'H5FD_LOG_FILE_IO' redeclared
warning: h5py/h5fd.pxd:55:6: 'H5FD_LOG_FLAVOR' redeclared
warning: h5py/h5fd.pxd:58:6: 'H5FD_LOG_NUM_READ' redeclared
warning: h5py/h5fd.pxd:59:6: 'H5FD_LOG_NUM_WRITE' redeclared
warning: h5py/h5fd.pxd:60:6: 'H5FD_LOG_NUM_SEEK' redeclared
warning: h5py/h5fd.pxd:61:6: 'H5FD_LOG_NUM_IO' redeclared
warning: h5py/h5fd.pxd:64:6: 'H5FD_LOG_TIME_OPEN' redeclared
warning: h5py/h5fd.pxd:65:6: 'H5FD_LOG_TIME_READ' redeclared
warning: h5py/h5fd.pxd:66:6: 'H5FD_LOG_TIME_WRITE' redeclared
warning: h5py/h5fd.pxd:67:6: 'H5FD_LOG_TIME_SEEK' redeclared
warning: h5py/h5fd.pxd:68:6: 'H5FD_LOG_TIME_CLOSE' redeclared
warning: h5py/h5fd.pxd:69:6: 'H5FD_LOG_TIME_IO' redeclared
warning: h5py/h5fd.pxd:72:6: 'H5FD_LOG_ALLOC' redeclared
warning: h5py/h5fd.pxd:73:6: 'H5FD_LOG_ALL' redeclared
[13/22] Cythonizing /tmp/pip-build-lz6k0h4z/h5py/h5py/h5g.pyx
warning: h5py/api_types_hdf5.pxd:350:2: 'H5D_layout_t' redeclared
warning: h5py/api_types_hdf5.pxd:357:2: 'H5D_alloc_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:364:2: 'H5D_space_status_t' redeclared
warning: h5py/api_types_hdf5.pxd:370:2: 'H5D_fill_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:376:2: 'H5D_fill_value_t' redeclared
warning: h5py/api_types_hdf5.pxd:388:7: 'H5F_close_degree_t' redeclared
warning: h5py/api_types_hdf5.pxd:394:2: 'H5FD_mem_t' redeclared
warning: h5py/api_types_hdf5.pxd:492:2: 'H5T_cset_t' redeclared
warning: h5py/api_types_hdf5.pxd:671:7: 'H5Z_EDC_t' redeclared
warning: h5py/api_types_hdf5.pxd:351:4: 'H5D_LAYOUT_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:352:4: 'H5D_COMPACT' redeclared
warning: h5py/api_types_hdf5.pxd:353:4: 'H5D_CONTIGUOUS' redeclared
warning: h5py/api_types_hdf5.pxd:354:4: 'H5D_CHUNKED' redeclared
warning: h5py/api_types_hdf5.pxd:355:4: 'H5D_NLAYOUTS' redeclared
warning: h5py/api_types_hdf5.pxd:358:4: 'H5D_ALLOC_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:359:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:360:4: 'H5D_ALLOC_TIME_EARLY' redeclared
warning: h5py/api_types_hdf5.pxd:361:4: 'H5D_ALLOC_TIME_LATE' redeclared
warning: h5py/api_types_hdf5.pxd:362:4: 'H5D_ALLOC_TIME_INCR' redeclared
warning: h5py/api_types_hdf5.pxd:365:4: 'H5D_SPACE_STATUS_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:366:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:367:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:368:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:371:4: 'H5D_FILL_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:372:4: 'H5D_FILL_TIME_ALLOC' redeclared
warning: h5py/api_types_hdf5.pxd:373:4: 'H5D_FILL_TIME_NEVER' redeclared
warning: h5py/api_types_hdf5.pxd:374:4: 'H5D_FILL_TIME_IFSET' redeclared
warning: h5py/api_types_hdf5.pxd:377:4: 'H5D_FILL_VALUE_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:378:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:379:4: 'H5D_FILL_VALUE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:380:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:389:4: 'H5F_CLOSE_WEAK' redeclared
warning: h5py/api_types_hdf5.pxd:390:4: 'H5F_CLOSE_SEMI' redeclared
warning: h5py/api_types_hdf5.pxd:391:4: 'H5F_CLOSE_STRONG' redeclared
warning: h5py/api_types_hdf5.pxd:392:4: 'H5F_CLOSE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:395:4: 'H5FD_MEM_NOLIST' redeclared
warning: h5py/api_types_hdf5.pxd:396:4: 'H5FD_MEM_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:397:4: 'H5FD_MEM_SUPER' redeclared
warning: h5py/api_types_hdf5.pxd:398:4: 'H5FD_MEM_BTREE' redeclared
warning: h5py/api_types_hdf5.pxd:399:4: 'H5FD_MEM_DRAW' redeclared
warning: h5py/api_types_hdf5.pxd:400:4: 'H5FD_MEM_GHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:401:4: 'H5FD_MEM_LHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:402:4: 'H5FD_MEM_OHDR' redeclared
warning: h5py/api_types_hdf5.pxd:403:4: 'H5FD_MEM_NTYPES' redeclared
warning: h5py/api_types_hdf5.pxd:493:4: 'H5T_CSET_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:494:4: 'H5T_CSET_ASCII' redeclared
warning: h5py/api_types_hdf5.pxd:637:2: 'H5Z_filter_t' redeclared
warning: h5py/api_types_hdf5.pxd:672:6: 'H5Z_ERROR_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:673:6: 'H5Z_DISABLE_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:674:6: 'H5Z_ENABLE_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:675:6: 'H5Z_NO_EDC' redeclared
[14/22] Cythonizing /tmp/pip-build-lz6k0h4z/h5py/h5py/h5i.pyx
warning: h5py/api_types_hdf5.pxd:350:2: 'H5D_layout_t' redeclared
warning: h5py/api_types_hdf5.pxd:357:2: 'H5D_alloc_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:364:2: 'H5D_space_status_t' redeclared
warning: h5py/api_types_hdf5.pxd:370:2: 'H5D_fill_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:376:2: 'H5D_fill_value_t' redeclared
warning: h5py/api_types_hdf5.pxd:388:7: 'H5F_close_degree_t' redeclared
warning: h5py/api_types_hdf5.pxd:394:2: 'H5FD_mem_t' redeclared
warning: h5py/api_types_hdf5.pxd:492:2: 'H5T_cset_t' redeclared
warning: h5py/api_types_hdf5.pxd:671:7: 'H5Z_EDC_t' redeclared
warning: h5py/api_types_hdf5.pxd:351:4: 'H5D_LAYOUT_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:352:4: 'H5D_COMPACT' redeclared
warning: h5py/api_types_hdf5.pxd:353:4: 'H5D_CONTIGUOUS' redeclared
warning: h5py/api_types_hdf5.pxd:354:4: 'H5D_CHUNKED' redeclared
warning: h5py/api_types_hdf5.pxd:355:4: 'H5D_NLAYOUTS' redeclared
warning: h5py/api_types_hdf5.pxd:358:4: 'H5D_ALLOC_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:359:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:360:4: 'H5D_ALLOC_TIME_EARLY' redeclared
warning: h5py/api_types_hdf5.pxd:361:4: 'H5D_ALLOC_TIME_LATE' redeclared
warning: h5py/api_types_hdf5.pxd:362:4: 'H5D_ALLOC_TIME_INCR' redeclared
warning: h5py/api_types_hdf5.pxd:365:4: 'H5D_SPACE_STATUS_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:366:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:367:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:368:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:371:4: 'H5D_FILL_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:372:4: 'H5D_FILL_TIME_ALLOC' redeclared
warning: h5py/api_types_hdf5.pxd:373:4: 'H5D_FILL_TIME_NEVER' redeclared
warning: h5py/api_types_hdf5.pxd:374:4: 'H5D_FILL_TIME_IFSET' redeclared
warning: h5py/api_types_hdf5.pxd:377:4: 'H5D_FILL_VALUE_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:378:4: 'H5D_FILL_VALUE_UNDEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:379:4: 'H5D_FILL_VALUE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:380:4: 'H5D_FILL_VALUE_USER_DEFINED' redeclared
warning: h5py/api_types_hdf5.pxd:389:4: 'H5F_CLOSE_WEAK' redeclared
warning: h5py/api_types_hdf5.pxd:390:4: 'H5F_CLOSE_SEMI' redeclared
warning: h5py/api_types_hdf5.pxd:391:4: 'H5F_CLOSE_STRONG' redeclared
warning: h5py/api_types_hdf5.pxd:392:4: 'H5F_CLOSE_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:395:4: 'H5FD_MEM_NOLIST' redeclared
warning: h5py/api_types_hdf5.pxd:396:4: 'H5FD_MEM_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:397:4: 'H5FD_MEM_SUPER' redeclared
warning: h5py/api_types_hdf5.pxd:398:4: 'H5FD_MEM_BTREE' redeclared
warning: h5py/api_types_hdf5.pxd:399:4: 'H5FD_MEM_DRAW' redeclared
warning: h5py/api_types_hdf5.pxd:400:4: 'H5FD_MEM_GHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:401:4: 'H5FD_MEM_LHEAP' redeclared
warning: h5py/api_types_hdf5.pxd:402:4: 'H5FD_MEM_OHDR' redeclared
warning: h5py/api_types_hdf5.pxd:403:4: 'H5FD_MEM_NTYPES' redeclared
warning: h5py/api_types_hdf5.pxd:493:4: 'H5T_CSET_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:494:4: 'H5T_CSET_ASCII' redeclared
warning: h5py/api_types_hdf5.pxd:637:2: 'H5Z_filter_t' redeclared
warning: h5py/api_types_hdf5.pxd:672:6: 'H5Z_ERROR_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:673:6: 'H5Z_DISABLE_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:674:6: 'H5Z_ENABLE_EDC' redeclared
warning: h5py/api_types_hdf5.pxd:675:6: 'H5Z_NO_EDC' redeclared
[15/22] Cythonizing /tmp/pip-build-lz6k0h4z/h5py/h5py/h5l.pyx
warning: h5py/api_types_hdf5.pxd:350:2: 'H5D_layout_t' redeclared
warning: h5py/api_types_hdf5.pxd:357:2: 'H5D_alloc_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:364:2: 'H5D_space_status_t' redeclared
warning: h5py/api_types_hdf5.pxd:370:2: 'H5D_fill_time_t' redeclared
warning: h5py/api_types_hdf5.pxd:376:2: 'H5D_fill_value_t' redeclared
warning: h5py/api_types_hdf5.pxd:388:7: 'H5F_close_degree_t' redeclared
warning: h5py/api_types_hdf5.pxd:394:2: 'H5FD_mem_t' redeclared
warning: h5py/api_types_hdf5.pxd:492:2: 'H5T_cset_t' redeclared
warning: h5py/api_types_hdf5.pxd:671:7: 'H5Z_EDC_t' redeclared
warning: h5py/api_types_hdf5.pxd:351:4: 'H5D_LAYOUT_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:352:4: 'H5D_COMPACT' redeclared
warning: h5py/api_types_hdf5.pxd:353:4: 'H5D_CONTIGUOUS' redeclared
warning: h5py/api_types_hdf5.pxd:354:4: 'H5D_CHUNKED' redeclared
warning: h5py/api_types_hdf5.pxd:355:4: 'H5D_NLAYOUTS' redeclared
warning: h5py/api_types_hdf5.pxd:358:4: 'H5D_ALLOC_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:359:4: 'H5D_ALLOC_TIME_DEFAULT' redeclared
warning: h5py/api_types_hdf5.pxd:360:4: 'H5D_ALLOC_TIME_EARLY' redeclared
warning: h5py/api_types_hdf5.pxd:361:4: 'H5D_ALLOC_TIME_LATE' redeclared
warning: h5py/api_types_hdf5.pxd:362:4: 'H5D_ALLOC_TIME_INCR' redeclared
warning: h5py/api_types_hdf5.pxd:365:4: 'H5D_SPACE_STATUS_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:366:4: 'H5D_SPACE_STATUS_NOT_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:367:4: 'H5D_SPACE_STATUS_PART_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:368:4: 'H5D_SPACE_STATUS_ALLOCATED' redeclared
warning: h5py/api_types_hdf5.pxd:371:4: 'H5D_FILL_TIME_ERROR' redeclared
warning: h5py/api_types_hdf5.pxd:372:4: 'H5D_FILL_TIME_ALLOC' redeclared
warning: h5py/api_types_hdf5.pxd:373:4: 'H5D_FILL_TIME_NEVER' redeclared
warning: h5py/api_types_hdf5.pxd:374:4: 'H5D_FILL_TIME_IFSET' redeclared
warning: h5py/api_type

It ends with:

e it by " “#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION” [-Wcpp]
#warning "Using deprecated NumPy API, disable it by "
^
In file included from /tmp/pip-build-lz6k0h4z/h5py/h5py/defs.c:611:0:
/tmp/pip-build-lz6k0h4z/h5py/h5py/api_compat.h:27:18: fatal error: hdf5.h: No such file or directory
compilation terminated.
error: command ‘aarch64-linux-gnu-gcc’ failed with exit status 1

----------------------------------------

Command “/usr/bin/python3 -u -c “import setuptools, tokenize;file=‘/tmp/pip-build-lz6k0h4z/h5py/setup.py’;exec(compile(getattr(tokenize, ‘open’, open)(file).read().replace(‘\r\n’, ‘\n’), file, ‘exec’))” install --record /tmp/pip-l4kvu5uj-record/install-record.txt --single-version-externally-managed --compile” failed with error code 1 in /tmp/pip-build-lz6k0h4z/h5py/

Yes.
Then apply the workaround in comment #2.

It doesn’t work at first time since the required libraries is not available.
Thanks.

Hi AastaLLL

Thanks,

Yes I got it to work now……

I used the following:

sudo apt-get -y install libhdf5-serial-dev hdf5-tools

Then Keras installed error free…

tx1 with Jetpack 3.3 tensorflow+keras+opencv3.2+python3+yolo_version2. → Up and running…

Sojohans

Good to know this.
Thanks for updating this with us.

Is it possible to install jupyter nootebook on the tx1 board?

Hi,

We don’t try it before.
But it should be okay since there are some users have successfully installed it.

Thanks.