I see on one of your pages (NVIDIA Clara Parabricks | NVIDIA Developer) that there are some long read analysis steps being reported, but when I look a the commands inside pbrun all I see are short read commands. How do I access any long read analyses (mapping or variant calling)?
Our Parabricks software is split into two packages (it can be confusing, I know). Parabricks Pipelines is what you have downloaded. That’s the one for short reads that uses pbrun, Parabricks Toolkits is for long reads and can be found on GitHub: clara-parabricks · GitHub.
Hopefully that helps!
Ah. I see. So for mapping and variant calling of long reads would you be recommending these?