I have installed Parabricks using Docker with a trial license. When running fq2bam as described in the manual (GETTING STARTED — Clara Parabricks Pipelines 3.2 documentation) to test the installation the program aborts with an error reading “Received signal: 11” while in GPU-BWA mem, Sorting Phase-I, version 3.6.1-1.ampere.
When trying to reproduce the error, I sometimes get “Received signal: 7” or “Received signal: 6” with the additional error message
PARABRICKS: /dnabricks//sortcommon/inc/compressfile.h:283: size_t LoopReader::LRread(int, char*, size_t): Assertion `size < 32 * BLOCK_BYTES' failed.
Is there anything I can do to fix this?