Hi, is the argument " --out-chim-type Junctions " needed when running rna_fq2bam for starfusion to work ? The essential arguments as per the STAR-Fusion documentation when running STAR for STAR-Fusion to work are --min-chim-segment 12 and --out-chim-format 1. This --out-chim-type Junctions seems specific to Parabricks.
Thanks,
Jagjit