Running the Parabricks docker image using Singularity doesn’t get me the Singularity terminal. Has it been tested yet?
Are you running the latest Parabricks 4.0 container? Which version of Parabricks are you running?
Yes, I’m using 4.0.0-1 from Nvidia Clara Parabricks | NVIDIA NGC. FYI: I’m using the same Singularity installation to load GATK4 images so I don’t think Singularity is the issue. Also, I’m having the same problem for other NVIDIA containers too, e.g. RAPIDS.
Thanks, I could resolve the issue related to the container: I had to first check out a GPU node on the cluster before executing “run singularity shell --nv image_name.img”.
I’m glad you were able to figure it out. Let us know if you have any other questions!