Clara parabricks failed with undefined symbol: cuGraphAddKernelNode_v2

Hi all,

I am trying to run parabricks on GPU nodes with RTX 3090, RTX 2080Ti or Telsa P100.
And I got this error when running the following command:

singularity run
-B /storage/scratch/iee/zl19g775/Ga_Gw_pop_gen:/input
-W /storage/scratch/iee/zl19g775/Ga_Gw_pop_gen
pbrun fq2bam
–ref /input/index/GaA/stickleback_v5_assembly.noY.fa
–in-fq /input/0_fastq_files/Gw_data_trimmed/A01a_F.1.fastq.gz /input/0_fastq_files/Gw_data_trimmed/A01a_F.2.fastq.gz “@RG\tID:HG002\tLB:lib\tPL:Illumina\tSM:HG002\tPU:HG002”
–out-bam /input/1_silver_set_3xB/1_default_calling/DeepVariant/

And it returned with these messages always:

please visit NVIDIA Clara - NVIDIA Docs for detailed documentation

[Parabricks Options Mesg]: Checking argument compatibility
[Parabricks Options Mesg]: Read group created for /input/0_fastq_files/Gw_data_trimmed/A01a_F.1.fastq.gz and
[Parabricks Options Mesg]: @RG\tID:HG002\tLB:lib\tPL:Illumina\tSM:HG002\tPU:HG002
/usr/local/parabricks/binaries//bin/bwa: symbol lookup error: /usr/local/parabricks/binaries//bin/bwa: undefined symbol: cuGraphAddKernelNode_v2
For technical support visit Help - NVIDIA Docs

Could not run fq2bam
Exiting pbrun …

There is an NVIDIA driver (520.61.05) installed and the CUDA version is 11.8.

Is it possible for you to help me to figure out what the problem is?

Thank a lot!


Those GPUs are not supported. Please see hardware requirements here: