I have access to a system where the most recent version of parabricks is 3.8.0.1.
I want to use the STAR aligner to align paired-end RNA-seq reads to a genome (I have already prepared the genome index).
Can I do that accelerated through parabricks 3.8.0.1?
There seems to be some predefined pipeline “fq2bam” which uses bwa… but I just want to run STAR, not some wrapper. Is that possible? A naive “pbrun star” or pbrun STAR" doesn’t seem to work.