CNVkit with AWS Parabricks

Healthcare Parabricks
1

I subscribed AWS Parabricks at AWS marketplace.

Parabricks is automatically, and already downloaded in AWS, so I cannot handle some options during installation.

I want to use CNVkit but it should be installed during installation phase with --cnvkit option.

How can I use CNVkit?

2

Hi jsh9120331,

Unfortunately, the AWS AMI does not support CNVKit.

To be able to use CNVKit on an AWS instance you will need to apply for Parabricks License and install it yourself.

Regards,
Myrieme