Using nvidia-docker/ Docker 19.03.5 - GPU detection issue

Healthcare Parabricks
1

When using this combination - results in error in the installer.py ““docker does not have nvidia runtime. Please add nvidia runtime to docker or install nvidia-docker. Exiting…””

Looking at the installer.py it appears it is not setup correctly, I have updated this file and posted at - parabricks-changes/installer.py at master · prabindh/parabricks-changes · GitHub

Diff can be seen at - changes for newer nvidia-docker runtime that does not require nvidia-… · prabindh/parabricks-changes@b39f61b · GitHub

Can someone confirm this issue / change ?

2

Thank you for your interest in Parabricks.

native docker gpu support was added from docker 19.03. Parabricks will be supporting native integration of gpu during installation in the upcoming version of Parabricks due to release soon. For the time being, in order to overcome this, you may use nvidia-docker2 and docker 18.06.