It failed when run bamsort.
The cmd used:
pbrun bamsort --ref fix_WYDT04_HiFiasm_genome.fa --in-bam DY90_rmdup.bam --out-bam output.bam --sort-order coordinate
rna_gatk , etc. can be run correctly.
Thanks for any advice.
I was just able to replicate your error. I am submitting a bug to our engineering team.
Thank you for your patience.
Hi @gburnett, Does this issue also exist in PB3.8?
Hi, @gburnett What is the status of this bug.
Hey @lkuang ,
This is fixed in the latest version of Parabricks 3.8.1. You should be able to download it from the trial portal.