Run parabricks docker container with workflow language (snakemake/nextflow)

Healthcare Parabricks
#1

Workflow languages like snakemake and nextflow support specifying a docker container for individual pipeline steps, which is nice for clearly documenting the environment:

https://snakemake.readthedocs.io/en/stable/snakefiles/deployment.html?highlight=docker#running-jobs-in-containers
https://www.nextflow.io/docs/latest/docker.html

Is it possible to use these features with the parabricks docker image? I am not sure how it would work given 1) inserting the license and 2) nvidia-docker. An example snakemake snippet might be:

rule gpu_fq2bam:
  container: "docker://nvcr.io/nvidia/clara/clara-parabricks:3.7.0-1"
  input:
      fastq_1="{sample}_1.fastq.gz",
      fastq_2="{sample}_2.fastq.gz",
      ref_fasta="refdata/bwa/hg37.fasta"
  output:
      "output.bam"
  shell:
      """
      fq2bam \
        --in-fq {input.fastq_1} {input.fastq_2} '@RG\tID:id\tSM:TUMOR\tLB:lib' \
        --ref {input.ref_fasta} \
        --out-bam {output}
      """